Gene VC0395_0436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0436 
Symbol 
ID5134768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp484778 
End bp485458 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content49% 
IMG OID640530759 
Producthaloacid dehalogenase/epoxide hydrolase family protein 
Protein accessionYP_001215277 
Protein GI147672474 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGAAT CCAGAGTAAA GTGTGTCATT TTTGACTGCG AAGGAACCTT AGTAGACAGC 
GAACGTTTGT GCTGTGAAGC TCTGGTACAA GTGTTTGGCG AACTTGGGGT GGCCTTAAGC
TACCAGCAGG TCGCTGAGCA TTTCTCGGGT GGCAAAATCG CCGACATTCT CCATGCGGCT
TGCCAACTGG CGAAGATAAC AGCGGATATT GATTTGCTTG AGCAGCGTTA CCGCTCGATT
GTCGCGGCAA CGTTTCGGCG CAAACTTTCT CCGATGGGGG GCGCGAGGGC ATTACTCAAT
TACTTGAAGC GTAACCAGAT TGAATTTTGT GTGGCGTCAA ACGCGCCACG AGAAAAAATC
GCGATGACCC TGACTCTCGC CGGTCTTGAG CACTATTTTG AAGGGCGGAT TTTTTCTGCT
TTTGATGCGA ACAGCTGGAA ACCTGAGCCG GATCTCATCC GTTATTGTGC AATGAACATG
GGTTTTACAT TGGATGAGTG CATTTATGTT GACGACACAC CGAAGGGCGT TGAAGCAGGA
TTAAATGCAG AAGTGCTGAC CTTTCAATTG AGCCCACTGA ATCCCCAACA TCGCAGCCAT
TCTCAGCAAG TGATTGTGCT GAGCAATCTA CTTCAACTTG CGGAGTATTT GAGTGGTAGC
GTGATGCGCC AATCCGCGTA A
 
Protein sequence
MTESRVKCVI FDCEGTLVDS ERLCCEALVQ VFGELGVALS YQQVAEHFSG GKIADILHAA 
CQLAKITADI DLLEQRYRSI VAATFRRKLS PMGGARALLN YLKRNQIEFC VASNAPREKI
AMTLTLAGLE HYFEGRIFSA FDANSWKPEP DLIRYCAMNM GFTLDECIYV DDTPKGVEAG
LNAEVLTFQL SPLNPQHRSH SQQVIVLSNL LQLAEYLSGS VMRQSA