| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0430 |
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| Symbol | deaD |
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| ID | 5134620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 476638 |
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| End bp | 478629 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530753 |
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| Product | ATP-dependent RNA helicase DeaD |
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| Protein accession | YP_001215271 |
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| Protein GI | 147671700 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0524797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGTTGGAA ATGGTAAAGC ACGTGGGACC TTGGTTATTT CTTCATTTAG TGGGATCCCC
ATGCAAGATA CTGCAATTCA ATTCAGTGAT TTAGCACTGA ACAGCGCCAT CCTTTCTGCC
CTAACCGAAA TGGGCTTCGT ATCACCAACT CCTATCCAAG CAGCAGCGAT TCCTGTTCTG
CTTGAAGGCC GTGATGCACT GGGTAAAGCG CAAACAGGTA CAGGTAAAAC AGCGGCATTC
TCTTTGCCTC TGCTCAACAA ACTTAATCTA TCTCAGTACA AGCCACAAGC TATCGTTATG
GCGCCAACAC GTGAGCTGGC GATTCAGGTA GCAGCCGAGA TCAAAAACCT AGGCCAAAAC
ATCAAAGGCC TCAAGGTTCT TGAGATCTAC GGTGGTGCTT CAATTCTTGA TCAAATGCGC
GCTCTGAAAT CTGGCGCTCA CATCGTTGTG GGTACGCCGG GTCGTGTAAA AGATCTGATC
ACTCGTGATC GTCTACACCT AGACGAATGT CATACTTTCA TCCTTGATGA AGCAGACGAA
ATGCTGAAAA TGGGCTTCGT TGATGACGTA ACTTGGATCA TGGAACAAGC GCCAGAGTCT
GCACAACGCG TACTGTTCTC AGCCACTATG CCGCCAATGG TTAAAGAAAT TGTTGAGCGT
TTCCTACGTG ATCCAGAGTG TGTTGACGTA GCGGGCTCTA ACCAAACGGT CGCGAAAGTT
GAGCAACAAT ACTGGGTAGT AAAAGGTGTA GAGAAAGATG AAGCGATGGC TCGTCTGCTT
GAAACCGAAG AAACCGATGC TTCTATCGTA TTCGTACGTA CTCGTCAGGA TACTGAGCGT
CTAGCGGATT GGCTGTGCGC GCGTGGCTTC AAAGCAGCGG CTCTGCACGG TGATATCCCT
CAGTCTCTGC GTGAGCGTAC TGTTGATCAT ATCAAACAAG GTGTGATTGA TATTCTGGTT
GCGACCGACG TTGTTGCACG TGGTCTGGAC GTTCCTCGTA TCACTCACGT ATACAACTAC
GATATTCCAT TTGATGTGGA ATCTTACATC CACCGTATCG GCCGTACTGG TCGTGCTGGA
CGTAAAGGTA AGGCGATCCT GCTGGTTCGT ACTAACCAAA TCCGCATGCT ACGTACTATC
GAGCGTGTCA CTCGTTCTTC AATGGAAGAG ATCCAACTGC CGCACCGCGA TAAAGTGGCT
GAATCTCGTC TGACTAAGCT GGGTCAAGAG CTGGCAGCAG ATAAAGAGTT CAGTTCGCTG
GAGCGTTTCG CTGATTTGGT TGAAAAACTG CAAGCGTCAC TGGAAATTGA TGCAACGACT
CTGGCTGCAA TCCTGCTGAA ACGTCAGCAA GGTAAGCGTC CACTGTTTTA TGTCGGCGCT
GATCCAATGA TCGAAGCGAT GGAGCGTGAA AAATCACGTC GTCGTGAGCG TCGTGATGAC
CGCCGCGATG GTGATCGTCC TGCTCGTCGT GAATTCGGTG GCCGCGATCA AGAAAACCAC
GATTGGGATA CTTACCAACT GCAAGTTGGC CGTGACCAAG GCGTTCAAGT GAAAGACATC
GTTGGTGCTC TCGCAAACGA ACTGGGTCTG ACTAAAGGTT CTATCGGTGC GATCAAACTG
GCTCAAGGCC ATACGTTTGT TCAGCTACCA AAAGCCATGT CAAATGACGT TTCTAGCAAG
CTACGTAAGC TGCGTATCCG CCAGAAAGAA GTGGGTGCTG TAGTGTGTGA CTTCGATGAC
TTCCGCGAAT CTCGTGGTGG TGCTCGTCGT GAAGGTGGTC CACGTCGCGA AGGTGGTCGT
CGTCCAGAAG GCAACCGTGA AGGCGGTTTC CGTGGTGGTC GTGAAGGCGG CCGCGAAGGT
GGTCGTGGCC GTGGTGGTGA AGGCCGTCCT TTCCGTGAAG GTGAGCGTCG TTTTGAGCGC
AACCGTAGTG GTGAGAGCAG TGGTAGCTAC CGTGGTGAGC GTGGCCATAG CCGTCGTCGC
GAAGAAGCAT AA
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| Protein sequence | MVGNGKARGT LVISSFSGIP MQDTAIQFSD LALNSAILSA LTEMGFVSPT PIQAAAIPVL
LEGRDALGKA QTGTGKTAAF SLPLLNKLNL SQYKPQAIVM APTRELAIQV AAEIKNLGQN
IKGLKVLEIY GGASILDQMR ALKSGAHIVV GTPGRVKDLI TRDRLHLDEC HTFILDEADE
MLKMGFVDDV TWIMEQAPES AQRVLFSATM PPMVKEIVER FLRDPECVDV AGSNQTVAKV
EQQYWVVKGV EKDEAMARLL ETEETDASIV FVRTRQDTER LADWLCARGF KAAALHGDIP
QSLRERTVDH IKQGVIDILV ATDVVARGLD VPRITHVYNY DIPFDVESYI HRIGRTGRAG
RKGKAILLVR TNQIRMLRTI ERVTRSSMEE IQLPHRDKVA ESRLTKLGQE LAADKEFSSL
ERFADLVEKL QASLEIDATT LAAILLKRQQ GKRPLFYVGA DPMIEAMERE KSRRRERRDD
RRDGDRPARR EFGGRDQENH DWDTYQLQVG RDQGVQVKDI VGALANELGL TKGSIGAIKL
AQGHTFVQLP KAMSNDVSSK LRKLRIRQKE VGAVVCDFDD FRESRGGARR EGGPRREGGR
RPEGNREGGF RGGREGGREG GRGRGGEGRP FREGERRFER NRSGESSGSY RGERGHSRRR
EEA
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