Gene VC0395_0419 details

Gene Information

• Locus tag: VC0395_0419
• Symbol: speA
• ID: 5134840
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 461782
• End bp: 463767
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640530742
• Product: arginine decarboxylase
• Protein accession: YP_001215260
• Protein GI: 147672120
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.00340731
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACATCTA GGGTGTCAGG TGTGATTTCA ACCGATGAAA TCATTGTAAT CCTCTCTGTT 
TTTGTGAGAT ACGATGTGGA ACAACCATCC AAATTAGACC GCGTTCGCGC TGACTACAAT 
GTGCATTACT GGAGCCAAGG CTTTTTTGGC ATTGACGATC AAGGCGAAGT GTATGTGTCG 
CCGAGAAAAG ACAAAGCTCA TCAAACGCAA TTAAGCTCAA TTGTTAAACA GCTCGAAGCG 
CGCGATTTAA ATTTGCCTGT GCTTGTACGC TTCCCGCAGA TCCTGCATCA ACGCGTGCAC 
AACATTTGTG ACGCTTTCAA TCAGGCGATT GAAGAGTACG ACTACCCAAA TAAATACCTG 
CTGGTTTATC CCATCAAAGT GAACCAACAA AAAGAGGTAG TAGATGAAAT TCTGGCCAGT 
CAGGCCGAAT TAGAACACAA ACAACTCGGC TTAGAAGCGG GCAGTAAGCC TGAACTTCTG 
GCGGTGTTGG CTATGGCTCA GCAAGCCAGT TCAGTGATTG TATGTAATGG TTACAAAGAC 
AGAGAGTACA TTCGTCTGGC ACTGATCGGT GAAAAACTGG GTCACAAAGT TTTCATCGTT 
CTGGAAAAAC TGTCAGAGCT GGATCTGGTC CTGAAAGAAG CGAAAAGCCT TGGCGTGAAA 
CCACGTCTGG GTCTGCGTAT TCGTCTTGCT TCTCAGGGTG CAGGCAAATG GCAATCGAGC 
GGCGGTGAAA AATCGAAGTT CGGCCTAGCT GCATCACAAG TGCTCACCGT GATTAACCGC 
TTGAAAGCGG AAAATCAACT GGAAGCACTG CAACTGGTGC ATTTCCACCT TGGTTCACAA 
ATGGCGAACA TTCGTGACGT GCGTAATGGT GTGAACGAAG CGGTGCGTTT CTACTGTGAA 
CTGCGTGAGC TGGGTGCGCA CATCGATTTC TTCGACGTGG GTGGCGGCTT GGCCGTGGAT 
TACGATGGTA CTCGTAGCCA GTCATCAAAC TCGATGAACT ACGGTCTGCA CGAATATGCG 
CGTAACATCG TGAGCACAGT GAGCGATGTG TGTAACCTGT ACGGTCAGCC TCGTCCGGTG 
ATCATTTCTG AATCGGGTCG TTCGATCACG GCGCACCATG CGGTATTGAT CACCAACGTT 
ATCGGTACGG AAGCCTACTC GCCAGAAGAG ATCCCAGCAC CGGGTGCGGA TGCGCCAATG 
CTACTGAAAA ACATGTGGCG TGGGTTTGAA GAAGTGCAAC ACGGTACCGA TGACCGCGCA 
CTGATTGAAA TTTACAACGA CACACAGAGC GATCTTTCTG AAGCGCATAG CCAGTTTGCA 
ACGGGTGTAT TAAACCTTGA GCACCGTGCA TGGGCAGAGC AGTTGTCACT GCGTATCTAC 
CATGAACTGC GTCAGAAGAT GAGCAACAAA AACCGCTTCC ATCGCCCGAT TCTGGATGAG 
CTGCAAGAGC GTTTAGCAGA CAAGTTCTTC GTGAACTTCT CACTGTTCCA GTCGCTGCCG 
GATGCTTGGG GTATCGATCA AGTGTTCCCA GTGCTGCCGC TTTCTGGTTT GGAAGAGATG 
AACGATCGTC GCGCAGTAAT GCTCGACATC ACCTGTGACT CAGACGGTGC GGTTGAACAG 
TACGTTGAAG GCCAAGGTAT TGAAAGTACA CTGCCTGTGC CAGCATGGAC GAGTGACAAG 
CCATACCTAA TGGGCTTTTT CCTGGTCGGT GCATACCAAG AAATCTTGGG CGATATGCAC 
AACCTGTTTG GTGACACACA CAGCGCGGTT GTGAATATTA ATGATAATGG CGAGTCTGAA 
ATTGCCTTTA TCAATGAAGG TGACACGGTT GAAGATATGA TGCGCTACGT TCACATCGAT 
GTAGATAAAA TTCGCACCAA CTATCGTCAA CTGGTTTCTC AACGTGTTGC CAAAGAAGAA 
CAAGAGACCG TTTTGGCGGA ACTTGAATTA GGCCTGAGCG GCTATACTTA CTTAGAGGAT 
TTCTAA 

 

Protein sequence

MTSRVSGVIS TDEIIVILSV FVRYDVEQPS KLDRVRADYN VHYWSQGFFG IDDQGEVYVS 
PRKDKAHQTQ LSSIVKQLEA RDLNLPVLVR FPQILHQRVH NICDAFNQAI EEYDYPNKYL 
LVYPIKVNQQ KEVVDEILAS QAELEHKQLG LEAGSKPELL AVLAMAQQAS SVIVCNGYKD 
REYIRLALIG EKLGHKVFIV LEKLSELDLV LKEAKSLGVK PRLGLRIRLA SQGAGKWQSS 
GGEKSKFGLA ASQVLTVINR LKAENQLEAL QLVHFHLGSQ MANIRDVRNG VNEAVRFYCE 
LRELGAHIDF FDVGGGLAVD YDGTRSQSSN SMNYGLHEYA RNIVSTVSDV CNLYGQPRPV 
IISESGRSIT AHHAVLITNV IGTEAYSPEE IPAPGADAPM LLKNMWRGFE EVQHGTDDRA 
LIEIYNDTQS DLSEAHSQFA TGVLNLEHRA WAEQLSLRIY HELRQKMSNK NRFHRPILDE 
LQERLADKFF VNFSLFQSLP DAWGIDQVFP VLPLSGLEEM NDRRAVMLDI TCDSDGAVEQ 
YVEGQGIEST LPVPAWTSDK PYLMGFFLVG AYQEILGDMH NLFGDTHSAV VNINDNGESE 
IAFINEGDTV EDMMRYVHID VDKIRTNYRQ LVSQRVAKEE QETVLAELEL GLSGYTYLED 
F