Gene VC0395_0353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0353 
Symboltdh 
ID5134329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp386195 
End bp387226 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content49% 
IMG OID640530676 
ProductL-threonine 3-dehydrogenase 
Protein accessionYP_001215194 
Protein GI147672484 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases 
TIGRFAM ID[TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCA AAGCACTTTC AAAACTGAAA CCAGAGCAGG GCATCTGGAT GAACGAAGTG 
GACATGCCTG AGCTTGGCCA CAACGACCTG CTGATCAAAA TTAAGAAAAC TGCCATTTGT
GGCACTGACG TACACATTTA TAACTGGGAT GAGTGGTCAC AAAAAACCAT TCCAGTGCCT
ATGGTAGTCG GCCATGAATA TGTGGGTGAA GTGGTTGGGA TTGGCCAAGA AGTGCGTGGT
TTCCAAATTG GAGATCGCGT TTCTGGTGAA GGTCACATCA CTTGTGGTCA CTGCCGTAAC
TGCCGTGGTG GCCGTACCCA CCTGTGCCGC AACACCATTG GTGTGGGCGT AAACCGCACG
GGTTGTTTCT CTGAATACTT AGTGATCCCA GCGTTTAACG CATTCAAGAT CCCGGATGGT
ATTTCAGATG ATCTGGCGTC TATTTTCGAC CCGTTTGGAA ACGCTGTACA CACTGCGCTT
TCATTCGACT TAGTGGGTGA AGATGTTCTG ATCACCGGTG CTGGCCCAAT CGGCATTATG
GCCGCAGCTG TTGCGAAACA TGTAGGTGCG CGCCATGTGG TGATCACCGA TGTGAACGAA
TACCGCCTCG ATTTAGCCCG TAAAATGGGC GTGACTCGCG CTGTGAACGT TGCTGAGCAA
AACCTAGAAG ACGTGATGAA AGAACTCGGT ATGACCGAAG GTTTTGATGT GGGCTTAGAG
ATGTCTGGTG TACCGAGTGC GTTTAGCGCC ATGCTAAAAA CCATGAACCA CGGTGGCCGC
ATTGCTCTGT TAGGTATTCC ACCGTCATCG ATGGCGATTG ATTGGAACCA AGTGATCTTC
AAAGGCCTTG TTATTAAAGG GATTTATGGA AGGGAAATGT TTGAAACTTG GTATAAGATG
GCGAGCCTGA TCCAATCGGG TCTCGATATC AGCCCAATTA TCACTCACCA CTTCAAAGTG
GATGACTTCC AAAAAGGCTT CGACATCATG CGCAGCGGGG CTTCTGGCAA AGTTATCCTC
GATTGGCAGT AA
 
Protein sequence
MKIKALSKLK PEQGIWMNEV DMPELGHNDL LIKIKKTAIC GTDVHIYNWD EWSQKTIPVP 
MVVGHEYVGE VVGIGQEVRG FQIGDRVSGE GHITCGHCRN CRGGRTHLCR NTIGVGVNRT
GCFSEYLVIP AFNAFKIPDG ISDDLASIFD PFGNAVHTAL SFDLVGEDVL ITGAGPIGIM
AAAVAKHVGA RHVVITDVNE YRLDLARKMG VTRAVNVAEQ NLEDVMKELG MTEGFDVGLE
MSGVPSAFSA MLKTMNHGGR IALLGIPPSS MAIDWNQVIF KGLVIKGIYG REMFETWYKM
ASLIQSGLDI SPIITHHFKV DDFQKGFDIM RSGASGKVIL DWQ