Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0353 |
Symbol | tdh |
ID | 5134329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 386195 |
End bp | 387226 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640530676 |
Product | L-threonine 3-dehydrogenase |
Protein accession | YP_001215194 |
Protein GI | 147672484 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCA AAGCACTTTC AAAACTGAAA CCAGAGCAGG GCATCTGGAT GAACGAAGTG GACATGCCTG AGCTTGGCCA CAACGACCTG CTGATCAAAA TTAAGAAAAC TGCCATTTGT GGCACTGACG TACACATTTA TAACTGGGAT GAGTGGTCAC AAAAAACCAT TCCAGTGCCT ATGGTAGTCG GCCATGAATA TGTGGGTGAA GTGGTTGGGA TTGGCCAAGA AGTGCGTGGT TTCCAAATTG GAGATCGCGT TTCTGGTGAA GGTCACATCA CTTGTGGTCA CTGCCGTAAC TGCCGTGGTG GCCGTACCCA CCTGTGCCGC AACACCATTG GTGTGGGCGT AAACCGCACG GGTTGTTTCT CTGAATACTT AGTGATCCCA GCGTTTAACG CATTCAAGAT CCCGGATGGT ATTTCAGATG ATCTGGCGTC TATTTTCGAC CCGTTTGGAA ACGCTGTACA CACTGCGCTT TCATTCGACT TAGTGGGTGA AGATGTTCTG ATCACCGGTG CTGGCCCAAT CGGCATTATG GCCGCAGCTG TTGCGAAACA TGTAGGTGCG CGCCATGTGG TGATCACCGA TGTGAACGAA TACCGCCTCG ATTTAGCCCG TAAAATGGGC GTGACTCGCG CTGTGAACGT TGCTGAGCAA AACCTAGAAG ACGTGATGAA AGAACTCGGT ATGACCGAAG GTTTTGATGT GGGCTTAGAG ATGTCTGGTG TACCGAGTGC GTTTAGCGCC ATGCTAAAAA CCATGAACCA CGGTGGCCGC ATTGCTCTGT TAGGTATTCC ACCGTCATCG ATGGCGATTG ATTGGAACCA AGTGATCTTC AAAGGCCTTG TTATTAAAGG GATTTATGGA AGGGAAATGT TTGAAACTTG GTATAAGATG GCGAGCCTGA TCCAATCGGG TCTCGATATC AGCCCAATTA TCACTCACCA CTTCAAAGTG GATGACTTCC AAAAAGGCTT CGACATCATG CGCAGCGGGG CTTCTGGCAA AGTTATCCTC GATTGGCAGT AA
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Protein sequence | MKIKALSKLK PEQGIWMNEV DMPELGHNDL LIKIKKTAIC GTDVHIYNWD EWSQKTIPVP MVVGHEYVGE VVGIGQEVRG FQIGDRVSGE GHITCGHCRN CRGGRTHLCR NTIGVGVNRT GCFSEYLVIP AFNAFKIPDG ISDDLASIFD PFGNAVHTAL SFDLVGEDVL ITGAGPIGIM AAAVAKHVGA RHVVITDVNE YRLDLARKMG VTRAVNVAEQ NLEDVMKELG MTEGFDVGLE MSGVPSAFSA MLKTMNHGGR IALLGIPPSS MAIDWNQVIF KGLVIKGIYG REMFETWYKM ASLIQSGLDI SPIITHHFKV DDFQKGFDIM RSGASGKVIL DWQ
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