| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0323 |
|---|
| Symbol | |
|---|
| ID | 5134075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 355682 |
|---|
| End bp | 356713 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640530646 |
|---|
| Product | putative hemin ABC transporter, permease protein |
|---|
| Protein accession | YP_001215164 |
|---|
| Protein GI | 147672216 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00139931 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAGAC GATTTCCTTT TGCTGTGACC ATCAGTTGCC TGACTCTGGC GGTCTTCTTT
GCGGGGCTGT ATTCCATCAC TGTCGGACCG ATGAACATCA CCATCTCTGA CAGTATTCAA
AGCCTGCTTT TTCGCTCCGA GCAACTCACG AATGCGATTC ATCTCGTTAT CCATGATATT
CGCTTACCAC GCACGCTCCT TTGTTTGTTG GTTGGGGCGA TTCTCGCGCT ATGCGGCACC
GCTATGCAGG GGCTATTCCG CAACCCGTTA GCTGAGCCGG GCATCATTGG CGTCTCCTCG
GGCGCCTCTC TTGGTGCGGC ACTCGCCATC GTGTTACTCA GTGATGTGGT GTCAAGCCTG
CCTTGGGTGA ATAGCTTGGT GCTGCCTATA GCGGCATTTA TCGGTGGCGC GCTGACAACC
GTATTGGTTT ATCGTCTTGG CACCTCTAAA TTTGGGACAT CGGTGACTAT CATGCTACTG
GCTGGGGTAG CCATTTCGGC TCTTGCAGGC GCAGGTATTG GTTATCTTAA TTATCTCGCG
AGCGATCAAA TGCTGCGCGA CTTAACCCTA TGGTCCATGG GTTCCGTGGC AGGCGCGACG
ACCTCCAGTA TTTTGCTGTG CAGTGTCACT CTAATCATGC TATTTGCCTA TTTCCATTGG
CGCTCGATGG CACTTAATGC CTTATTGCTT GGAGAGGCGG AAGCGCGCCA TCTTGGTGTT
CCAGTACAAA AACTCAAAAG AGAGATGATT CTGCTTTCGG CAGTAGGCGT CGGGGTTGCG
GTAAGTGCCG CAGGTATGAT CGGTTTTGTG GGGCTTGTGG TGCCACATAT TGGTCGCATG
TTGGTGGGTC CCGATCATCG TAACCTAGTG CCAGTCTCCA CTCTACTTGG TGCATTGATG
CTCACCCTTG CCGATATGGT CGCTCGGGTT GCGGTTGCGC CCGCTGAATT GCCAATTGGC
ATTGTCACCG CACTGGTCGG TGCCCCCTTC TTCTTGTATC TCCTATTCCA ACAAAAAGGT
CGAATATTCT GA
|
|---|
| Protein sequence | MLRRFPFAVT ISCLTLAVFF AGLYSITVGP MNITISDSIQ SLLFRSEQLT NAIHLVIHDI
RLPRTLLCLL VGAILALCGT AMQGLFRNPL AEPGIIGVSS GASLGAALAI VLLSDVVSSL
PWVNSLVLPI AAFIGGALTT VLVYRLGTSK FGTSVTIMLL AGVAISALAG AGIGYLNYLA
SDQMLRDLTL WSMGSVAGAT TSSILLCSVT LIMLFAYFHW RSMALNALLL GEAEARHLGV
PVQKLKREMI LLSAVGVGVA VSAAGMIGFV GLVVPHIGRM LVGPDHRNLV PVSTLLGALM
LTLADMVARV AVAPAELPIG IVTALVGAPF FLYLLFQQKG RIF
|
|---|
| |