Gene VC0395_0185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0185 
Symbol 
ID5134316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp217302 
End bp219614 
Gene Length2313 bp 
Protein Length770 aa 
Translation table11 
GC content48% 
IMG OID640530508 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001215026 
Protein GI147672207 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTG CCAACAAAAT CGTATTGTCT ATGACATTGC TGTCCATTTT TTCGGTCGTG 
ATTGCAGGAG TGTGGGTGGG TTGGAGCGCC GCCACTCTGT CTAAACAAGC GATCTATGAG
CGAGCCTCGA ACCAACTCCT TTCGGTTCGT GAAACCAAAA AAAGTGAGAT TGAACGCTAT
TTAACACGAG TAGCGGGGCA ACTTGTGACC TTAGCTAATA TGGTCTCCAC TGTGGAGGCA
ATGGAAGGCT TGACTCAAGC CTACCAAGCT TACCCCGTTG AACAGGTGCC AGCTTCTTCG
CTCATTGCCC TAAAAGACTA TTACACCACT CAATTTGGTC AGAATTATCA GAAGTTAAAC
GACGGCCAAG ATGCGAACCC GTTAGCGCGT TTGAATCTGT TATCCAGATC CGCGGAAGCG
TTACAAGCCC GTTATATTGC CAGCAACCCT AACCCGCTTG GCGCTAAGCA TGAGTGGGAG
AGTGATTCGC TAGGTAACGC GTATGATGCT TTGCATCAAA AGTACCATCC TGGGATTAAG
CAGTATTTAG AGCAGTTCGG TTTGTATGAT GTGTTTATGG TCGATAATGA CGGTCATGTG
GTGTACACCG TATTCAAAGA GCTTGATTTT GCGACCAATT TGCTGAGCGG TCCGTACAAA
GAGAGCGGAC TAGCAAGGGC TTATGTGCAA GCCAAAACCT TAGCCAATAA TCAGTATTAT
CTTGACGATT TTGCACCTTA CTATCCCTCT TATGAGGCGG CGGCTTCATT CATTTCGACC
CCTATCTTTA ACGGTAGTAC TCGAGTTGGT GTTCTGATCT TTCAAATGCC AGTGGATGAA
ATTAATAGCA TTATGACGTT CGATTCCCGT TGGAAAGAAA ACGGGCTTGG GAATACCGGC
CAGAGCTATT TAGTGGGCAG TGATCACCTG ATGCGTAGTC AGCCCCGTTT ACTGCTGGAA
GATGCTTCGG CCTTCATCGG GACATTGAAT TCATTAACGG GTGATCGAGC GGCAATCAAT
CAGATCCGCA GTAAACAATC CGCGATTGGT TTGCTTAAGG TCAGTTCGCA AGCCGTGGAT
AAGGCTTTGA GAGGCGAGAG TGGATTAATG ATGGAGAGTA CGCATGCCAG TGTGCAGTTA
CTATCAGCAT ACACACCGCT TGATGCATTA GGGTTACGCT GGGCGTTAGT CACTGAAATG
CAGGCAGACG AAGCGTTAGC CGATATTGCG AAGCTTTCCG ACGAACTGAT TATGAAAGTG
CTGATCGCCA TCGTGATCGG CGCAGTCATT GCGACACTTG CGGCATGGAT GGTGGGGAAT
GGAATTTCTA AACCGATTCG TGATTCGATA AGCCAAATTC AACGGATGAG TCGAGATAAT
GATTTAACGG TGCGGTTATC TGAGCAAGGC AGTGATGAGA TCCGACAGTT GGCGCAAGCG
CTCAATCGTA TGCTGAGCCA TCTGCAAGAT ACGATTTGTC AGTTCGCTCA TACGACTGAC
AAACTCAACT CTCACACTCA AACCATTACA CATAATATGA CCGGAACGCG TAATTCGGTA
TCTGAGCAGC ATGAGCGTAC GGATTCGGTG GTCACGGCGG TAAATGAAAT GAGCGCTTCG
ATTACCGAAG TGTCTGAATT TGCACAGCGA GCAGCCACTT TTGTGCAGGA AGCCAATCAA
AAGGGCCACG GCGGTGTCTC AGTGGGCAAT GAGCTTGCGC GCGATATGAC ATCAATAAAC
CAACAAATGG CCTCGGCCGT TGAAGCGATT GCACGGTTAA ATCATGAAAG CCAATCTATC
GCCTCGGTAC TCGATGTGAT CCAAGCGATT GCCGAGCAGA CCAACTTGCT GGCGTTGAAT
GCCGCCATTG AGGCAGCTCG CGCTGGAGAA CAAGGGCGAG GCTTTGCGGT GGTCGCGGAT
GAGGTGCGTA ATCTTGCCGC AAAAACGCAA ACCTCGACTG AAGAGATCCG CACCAAAATT
GATCGCTTAC AAAAAGAAAC TCAGTCTGTC GTCAACTGTA TCGAAGAGGC GAATAATACG
GTGGTTCGCG GTGTGGCTAC CTGTCATAGC AATACCGATA TGCTCAAACA GATTGTCGAT
ATGCTCAATG AATTAAACGA GATGAATATC CAAATCGCGA CTGCAACTGA GCAACAGCGT
GGTGTTACTG AAGAAATTAA CGCCAATATC ACCTCAATTT CGGATGTTTC TGCGTCTGTG
ACGGTGCAAG TCGGCGAAGT GAACGCCATC GTGAATGAGT TATCCGATGA AGCGATGGAA
TTAAGCAAGC GAATGGGACA GTTCCGCTAT TAA
 
Protein sequence
MKIANKIVLS MTLLSIFSVV IAGVWVGWSA ATLSKQAIYE RASNQLLSVR ETKKSEIERY 
LTRVAGQLVT LANMVSTVEA MEGLTQAYQA YPVEQVPASS LIALKDYYTT QFGQNYQKLN
DGQDANPLAR LNLLSRSAEA LQARYIASNP NPLGAKHEWE SDSLGNAYDA LHQKYHPGIK
QYLEQFGLYD VFMVDNDGHV VYTVFKELDF ATNLLSGPYK ESGLARAYVQ AKTLANNQYY
LDDFAPYYPS YEAAASFIST PIFNGSTRVG VLIFQMPVDE INSIMTFDSR WKENGLGNTG
QSYLVGSDHL MRSQPRLLLE DASAFIGTLN SLTGDRAAIN QIRSKQSAIG LLKVSSQAVD
KALRGESGLM MESTHASVQL LSAYTPLDAL GLRWALVTEM QADEALADIA KLSDELIMKV
LIAIVIGAVI ATLAAWMVGN GISKPIRDSI SQIQRMSRDN DLTVRLSEQG SDEIRQLAQA
LNRMLSHLQD TICQFAHTTD KLNSHTQTIT HNMTGTRNSV SEQHERTDSV VTAVNEMSAS
ITEVSEFAQR AATFVQEANQ KGHGGVSVGN ELARDMTSIN QQMASAVEAI ARLNHESQSI
ASVLDVIQAI AEQTNLLALN AAIEAARAGE QGRGFAVVAD EVRNLAAKTQ TSTEEIRTKI
DRLQKETQSV VNCIEEANNT VVRGVATCHS NTDMLKQIVD MLNELNEMNI QIATATEQQR
GVTEEINANI TSISDVSASV TVQVGEVNAI VNELSDEAME LSKRMGQFRY