Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0169 |
Symbol | putA |
ID | 5134024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 198358 |
End bp | 201477 |
Gene Length | 3120 bp |
Protein Length | 1039 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640530492 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001215010 |
Protein GI | 147671673 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0936263 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTACAG CAACCGATGT GTTGAACGCA GCGTTTATCG AGCAGCCGCT GGATAAACTA TGGTCGCTGA TCTCGCCACT GTATATGGTG GACGAATCCC AATGGCTGAC CCAATTATTG CCTCTCGCAA CGCCAAGCCA TGCTGAAAAA GCAGCAATGG CAGAGAAAAC CACGCGCTTA ATTGAAGCGA TCCGCAGCGA TAAAAAAGCG GTGCAGATGA TTGATGCACT GCTTTTGGAA TACAGCTTGG ATACCCAAGA AGGTATTTTG CTGATGTGTT TGGCGGAAGC GTTAATGCGT ATTCCTGATG CGGAAACGGC TGACGCGTTT ATTAAAGACC GCTTGGGTGT TGCGGATTGG AAATCCCACC TGAAAAATTC AGATTCTGTA TTCGTGAATG CTTCAACTTG GGGCTTGATG CTGACAGGTA AAGTGATTGG CTTGGCAGAT GGAGATATCG CAAGCCCAGT GCAAGCGGTG AATCGCTTAG TGAATAAGCT GACTGAACCT GTGATCCGCA AAGCCATGCA TCAAGCCATG AAGATCATGG GCCATCAATT TGTGCTTGGA CGCACCATTG AAGAAGCGCA GAAAAATGGT CGCCCGATGC GTGATAAGGG TTATACCTAT TCGTTTGATA TGTTGGGTGA AGCGGCGCTG ACTTCTGCCG ATGCGCACAA GTATTTCAAA GATTACTTGA TGGCGATTGA AGCGGTAGGC CGCGATAAAT ATGGTCTGGA GACCAGCCCT GCGCCGTCGG TCTCGATCAA ACTTTCTGCT TTGCATCCTC GCTACCAAGT GGCGAATGCC GATCGCGTGA TGACCGAGCT GTACAGCACA CTTATTCAAC TGCTTGAGCG CGCGAAAGAG CTGGATGTCG CCATCACGAT TGATGCCGAA GAAGCGGATC GTTTAGAGCT GTCACTGCAT CTGTTTGAAA AGCTCTACCG CAGCGACACG CTGCGTGGTT GGGGTAAGTT TGGTTTGGTG GTTCAAGCCT ACTCCAAACG TGCGTTGCCA GTATTGGTTT GGCTGACGGC TCTCGCGAAA GAGCAGGGCG ATCTCATTCC TGTGCGTTTA GTCAAAGGTG CGTATTGGGA CAGCGAAATT AAGATGTCAC AGCAACGAGG CTTTATTGGC TATCCGGTTT ATACGCGCAA AGAAGCGACC GATGTTTCTT ATCTCGCTTG TGCTCGTTTC TTACTGAGCG AATCGGTACG CGGCAATCTG TTCCCGCAAT TTGCTAGCCA TAACGCGCAA ACCGTTACCG CGATTGCGGT GATGGCACAA CACAAAGATT TTGAATTTCA GCGTTTGCAT GGCATGGGGG ATGCGCTTTA TCACCATGCG AAAGCCGCTT ATCAGCAGTC GGTACGGATT TATGCCCCCG TGGGCAGCCA TAAAGATCTG CTGCCCTATC TGGTGCGTCG ATTATTGGAA AATGGTGCAA ACAGTTCGTT CGTACACCGC TTGGTGGACT CGCGCTGCCC GATTGGTGCG TTGACTCAGC ATCCAGTCGA TATGCTGCTT GCGTTTGAAA CCTTAAATAA CCGTAAGATC CCACTGCCAA CGGAGATTTT TGCCGAGCGC AAAAACTCAT TGGGGATCAA CATTGATATT GAGAGTGAAG CGAAGCCGTT TGAAGCTCAG ATCCACGCTT GGTTAGATAA GACGTGGCAT GCGGTACCGA TCATTGGCGG GCACTCTTAT TACGAAAGCA TGATCAAGGC GGATCACAGT GCAGAGCCCG TCACTGCGCC TTACGATCGT CGTATTCAAG TCGGTCAGGT GTTTCACGCT AACCTTGATC ATGTTTCCGA TGCGATCGAC TCTGCTCAAC AAGCTTTTGC AACTTGGAAT GCGCTTGATG CCAAAGTGCG TGCGAGTAAA TTGGATGCGC TGGCGGATCT GCTTGAACTG CATATGCCTG AGTTGGTGGC CTTGTGTCAC CAAGAAGCAG GCAAAACCAT TCACGACAGC ATTGATGAAG TGCGTGAAGC GGTCGATTTC TGTCGTTATT ACGCCAAACA AGTCGATGTG CTGGGCGAGT TCAGTGTCGA AAGCTTTGAT GGATCAACAC GTCGTGTTAG CCGTCAAGGT CGTGGTGTAT TTGTGTGTAT CAGCCCGTGG AACTTCCCGC TGGCGATTTT CCTTGGCCAA ATCAGTGCTG CCTTGGTGGC CGGAAATACC GTGATTGCCA AACCTGCCGA GCAAACCAGT TTGATCGCGT ATCGCGCGGT TGAGCTGATG CAAGAAGCGG GTTTCCCTGC TGGAACCATC CAACTTTTGC CGGGACGCGG TGCCGATATC GGCAGCGCAC TCACTTCTCA TCCGGCCATC GCGGGTGTGG CGTTTACTGG CTCGACCGCC ACGGCGCAGC GCATTAACCA AACGTTAGCG CAACGTGAAG CGGCTCCGGT ACCATTTATT GCAGAAACTG GCGGTCAAAA CGCCATGATT GTCGACAGTA CCGCGCTGCC AGAGCAAGTG GTGCGTGATG TGCTGCGTTC CGCTTTTGCC TCTGCTGGCC AACGCTGTTC GGCACTGCGT GTGCTGTTTG TACAGCAGGA TATTGCCGAT CGCGTGATTA CTTTGATTCA GGGCGCGATG CAAGAGCTGA AAGTCGGTGT GCCACATCTG CATCAAACCG ATGTCGGTCC AGTGATTGAT GAAAAAGCCA AACAGAAACT GTTGGCGCAC ATTGAACACA TGAGCCAAAC CCAGAAGAAA ATCGCTCAGC TTACTTTGGA TGACGCTTGC CAACATGGCG ACTTTGTTGC GCCAACCGCC TTTGAAATTG ATGATATTGC CGCGCTGAGT GAAGAGCAGT TTGGCCCGAT CTTGCACATT GTTCGGTTTA AAGCACGCGA ATTGGCGCAG ATCGTCGACA AAATCAACCA AACTGGTTTT GGTTTAACCA TGGGCATTCA TAGCCGTAAC GAAACCACGT ATCGCTGGAT TGAAAAACAT GCTCGAGTGG GCAACTGCTA TATCAACCGC GATCAAGTCG GGGCTGTGGT GGGGGTACAA CCGTTTGGCG GACAAGGCTT GTCAGGAACG GGGCCGAAAG CGGGCGGGCC TCACTATCTT TACCGCTTTA CTCAAGTGCA ATACCAATAA
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Protein sequence | MFTATDVLNA AFIEQPLDKL WSLISPLYMV DESQWLTQLL PLATPSHAEK AAMAEKTTRL IEAIRSDKKA VQMIDALLLE YSLDTQEGIL LMCLAEALMR IPDAETADAF IKDRLGVADW KSHLKNSDSV FVNASTWGLM LTGKVIGLAD GDIASPVQAV NRLVNKLTEP VIRKAMHQAM KIMGHQFVLG RTIEEAQKNG RPMRDKGYTY SFDMLGEAAL TSADAHKYFK DYLMAIEAVG RDKYGLETSP APSVSIKLSA LHPRYQVANA DRVMTELYST LIQLLERAKE LDVAITIDAE EADRLELSLH LFEKLYRSDT LRGWGKFGLV VQAYSKRALP VLVWLTALAK EQGDLIPVRL VKGAYWDSEI KMSQQRGFIG YPVYTRKEAT DVSYLACARF LLSESVRGNL FPQFASHNAQ TVTAIAVMAQ HKDFEFQRLH GMGDALYHHA KAAYQQSVRI YAPVGSHKDL LPYLVRRLLE NGANSSFVHR LVDSRCPIGA LTQHPVDMLL AFETLNNRKI PLPTEIFAER KNSLGINIDI ESEAKPFEAQ IHAWLDKTWH AVPIIGGHSY YESMIKADHS AEPVTAPYDR RIQVGQVFHA NLDHVSDAID SAQQAFATWN ALDAKVRASK LDALADLLEL HMPELVALCH QEAGKTIHDS IDEVREAVDF CRYYAKQVDV LGEFSVESFD GSTRRVSRQG RGVFVCISPW NFPLAIFLGQ ISAALVAGNT VIAKPAEQTS LIAYRAVELM QEAGFPAGTI QLLPGRGADI GSALTSHPAI AGVAFTGSTA TAQRINQTLA QREAAPVPFI AETGGQNAMI VDSTALPEQV VRDVLRSAFA SAGQRCSALR VLFVQQDIAD RVITLIQGAM QELKVGVPHL HQTDVGPVID EKAKQKLLAH IEHMSQTQKK IAQLTLDDAC QHGDFVAPTA FEIDDIAALS EEQFGPILHI VRFKARELAQ IVDKINQTGF GLTMGIHSRN ETTYRWIEKH ARVGNCYINR DQVGAVVGVQ PFGGQGLSGT GPKAGGPHYL YRFTQVQYQ
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