| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0162 |
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| Symbol | |
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| ID | 5134542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 190341 |
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| End bp | 191786 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640530485 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001215003 |
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| Protein GI | 147671735 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCCACG TAATAAAATC AACCGACTAT CAATGGTGTG AACAGGAACC ACTCATGAGC
AATCGCAGTT ATAACAAGCT CACCGCCGAA GAATTAGACT ATGTGGACGA TAAAACCGCC
GCACTGCTAC TCAATACGCC GCACAGCGCA CGAATCATTC TCTGGGTCAT GGTGGCATTT
TTTATTCTAG CGATTGCTTG GGCGTCATGG GCAGAAATCG ATAAAGTCAC GGTCGGCCAA
GGTAAAGTGG TTCCCTCCTC ACAAGTGCAA GTGATCCAAA ACTTGGAAGG GGGACTGGTC
AAGCAGATCC TCGTCCGTGA AGGTGAGCAA GTCCAAAAAG GCCAACAGCT TATCTTGATC
GACGACACAC GCTTTCGCTC CGATTTTCGC GAGCGCGAGC AGCAAGTTGC AAACTTAACC
GCCAGTGTTC TACAACTTTC TGCTTCCATT TCAAGCGTCA TTATCGATGA GAATTTTGAA
GAGAAGAACT GGGCAAATAG CGTACAACTT GATTACAGCA AGCTTGCTTT CCCTCCCGTA
TTGAGTGATA GCCAGCCAGA TTTGGTTGAA CGCCAACGAG ATCAATATCG CCAAGATCTC
GATAACCTGC GCAACCAATT GTCCGTTCTC TCTCAACAAA TCAAGCAGAA ACAGCAAGAT
TTGATTGAAG CCGAAGCGCG AATCATCAAC CTTCGCCAAA GTTATGATTA CGCGAAAAAA
GAACTCGACA TCACTGAGCC TCTCGCCAAC GAAGGCGTAG TCCCGAAAAT TGAACTGCTG
AAACTACAGC GCCAGTTGAA TGATACTCGC CGAGAGTTAA CCTCAACTGA GCTAAAAATT
CCCGTACTCA AATCCGCGGT CCGTGAAGCG ATGCTCAGTC GAATTAATGC CGCGCAAAAA
TTCCGAACTG AGCAGCAAGA TAAACTCAAC CAAGCGCAAG ATAAGCTCTC ATCTCTCACT
GAATCGGCGG TCGGCCTCGA GGATAAAGTG AACCGTACGG TAGTGGTTTC CCCCGTAACA
GGCACCGTAA AAACCCTTTA TGTGAACACG GTAGGTGGGG TGATTCAACC GGGAATGAAC
ATCATCGAAA TCGTACCGAC TGAAGACACT CTATTGGTCG AGGCTCAAAT TGCGCCGCAA
GACATCGCCT TTCTGCGCCC AGATCTGCCA GCTATTGTGA AATTTAGTGC TTATGATTTC
ACGCGCTATG GTGGCTTAGA AGGCACGCTC GAACACATCA GTGCGGACAC TACACAGGAT
GAGGAAGGGA ATAGTTTCTA TTTGGTTCGC GTACGCACTA AAGAAACCAC TCTCGGGCAT
GATCAAAATT TGCCGATCAT TCCGGGAATG ACCGCTTCTG TCGACATTAT TACCGGTAAA
AGAACTGTAT TAGATTATCT GCTGAAACCG ATTTTAAGTG CGCAAAGCAA TGCGCTGAGG
GAATAG
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| Protein sequence | MAHVIKSTDY QWCEQEPLMS NRSYNKLTAE ELDYVDDKTA ALLLNTPHSA RIILWVMVAF
FILAIAWASW AEIDKVTVGQ GKVVPSSQVQ VIQNLEGGLV KQILVREGEQ VQKGQQLILI
DDTRFRSDFR EREQQVANLT ASVLQLSASI SSVIIDENFE EKNWANSVQL DYSKLAFPPV
LSDSQPDLVE RQRDQYRQDL DNLRNQLSVL SQQIKQKQQD LIEAEARIIN LRQSYDYAKK
ELDITEPLAN EGVVPKIELL KLQRQLNDTR RELTSTELKI PVLKSAVREA MLSRINAAQK
FRTEQQDKLN QAQDKLSSLT ESAVGLEDKV NRTVVVSPVT GTVKTLYVNT VGGVIQPGMN
IIEIVPTEDT LLVEAQIAPQ DIAFLRPDLP AIVKFSAYDF TRYGGLEGTL EHISADTTQD
EEGNSFYLVR VRTKETTLGH DQNLPIIPGM TASVDIITGK RTVLDYLLKP ILSAQSNALR
E
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