Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0117 |
Symbol | glgB |
ID | 5134337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 133334 |
End bp | 135523 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640530440 |
Product | glycogen branching enzyme |
Protein accession | YP_001214958 |
Protein GI | 147671860 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGATCA CAAAAAAACC ATCCAAGGTT CAACAATTTT ATGATCAGTT GGCGCGTGCA GCGTTTGCTG ATCCCTTTTC ATTTCTAGGC CCTTACATTC CCGCTGAACA AGGTGCGCTG CGAGTGTGGA TGCCGGGGGC TGACAACGTC GCGTTGGTGG TTGAAGGGCA AGCTCGTGTG GCGTTAGAGC GTGAAGGCGA GGGCGGCTTT GTGCTGAAAG ATGGCCGTAA TCTGCGTTTT ACGCACTACC AATTGGCTGT CGATTGGGCG GGTACCGAGC AGTTACTCGA TGATCCGTAT CAATATCACG GCCTCTACGC TGAATATGAA GATCTGCATA CGCCAAAGCA GATGTATCAC CATATGGGGG CGCAGTTTGT CACCCTAGAG CGTGATGGAA AAATGGTCTC TGGCGTACGT TTTCTGGTGT ATGCCCCTCA CGCGGCGGCG TGCAGTTTGA TTGGCGCGTT TAACCATTGG GATGGTCGTC GCCATCCGAT GCAGCGTCTC GATTACGGTA TTTGGGGAAT TTTTATCCCC GGCTTGCCGG AAGGCACGCA ATACAAATTT GAGCTGAAAG GCCCACATGG AGAAGGTCTG CCGCATAAAG CGGATCCGTG GGGTTTTTAT GCTGAGCAAT ACCCTTCTTT TGCTTCTGTG ACTTATGATC ACCGTCGTTA TCAGTGGCAA GATACGGCTT GGCAGCAGCG CCCTGTGACT GAAAAGCGTA AACAAGCGCT CTCGTTTTAT GAGCTGCACG TTGGCTCATG GAAGCGAGGC GAAAACGGTG AATTCCTCAA TTATCGTGAA TTGGCCGATC AATTGGTGCC TTATCTGGTT GAGATGGGTT ATACCCATGT TGAGTTAATG CCTGTCGCTG AGCACCCATT TTATGGTTCT TGGGGCTATC AACCGGTTGG TCTGTTTGCG CCCACTAGCC GTTACGGCTC GCCGGATGAT TTCAAATATT TTGTCGATTT GTGCCACCAA GCGGGGATTG GTGTGGTGCT CGATTGGGTG CCTGCGCACT TCCCGTCGGA TTCTCACGGT CTGGCCAATT TTGATGGCAC GCCCTTATTC CATGATCCGG ATCCACGTCG CGGTTGGCAT CAAGACTGGA ACTCTTACAT CTACGATCTT GGTCGCGAGC ATGTGCGCCG TTTCTTAGTC GCTAATGCGC TGTATTGGTT TGAGATGTTC CATATCGATG GCATTCGCGT TGATGCGGTC GCATCGATGC TCTATCTCGA TTATTCGCGT AGCCATGATC AATGGATCCC GAATGTTGAC GGTGGACGCG AAAACTACGA TGCGATTGCT ACCTTCAAAT GGATGAACGA GGAGGTGTAC AAACACTTCC CGAATGCGAT GACGATTGCC GAAGAGTCGA CTGCGTTTCC TGGCGTTTCT GCCCCGACCT TTATGGGCGG TCTCGGGTTT GGTTTTAAGT GGAACATGGG CTGGATGCAC GATAGCTTAT CGTACATCAA AGAGGATCCG GTGCATCGTA AATACCACCA CAATACCCTG ACTTTCCCGC TGATTTACGC GTTTAGTGAA AACTATGTGC TCTCTTTATC ACACGATGAA GTGGTGTATG GTAAGCGCTC GCTTATGTAC AAGATGCCGG GTGATGAGTG GCAGCAAACC GCCAACTTAC GCGCCTACTT GGGTTATATG TATGGTCAGC CGGGCAAAAA ACTCAACTTT ATGGGTACCG AATTAGGACA GACTGCGGAG TGGGATCACG ATGGTCAGTT GCAGTGGTTC TTAACGCAAT TTGAGCGCCA TGCGGGGATC CAGCGTTTGG TGCGTGATTT GAACCATCTG TACCAAGCCC AAACCGCGTT GCATCAGCTT GATTGCGATC CGCGTTGCTT CGAATGGCGC TTACAAGATA ATGCCGATCT CAGCGTGATC GCCCATGAAC GGATGGATGA AGCTGGTAAT CGTGTGTTAG TGATCACCAA CTTCACGCCT GTTCCACAGC AGGCATTTCG CTTAGGTGTT CCTAAAACAG GGAAGTACCG CTTGTTGCTC AATACTGATG CCAAGCAGTA CAACGGCAGT GATTATCCGG TATTGCAGGA TGTGAGTACG GAAGCGATCA GCAGTGAAGG TTTGGATCAA TCGCTGCTAT TGAGTGTGCC GCCGCTCGCG ACGCTATTTT ATCAATGGAG TGCGAAGTAG
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Protein sequence | MKITKKPSKV QQFYDQLARA AFADPFSFLG PYIPAEQGAL RVWMPGADNV ALVVEGQARV ALEREGEGGF VLKDGRNLRF THYQLAVDWA GTEQLLDDPY QYHGLYAEYE DLHTPKQMYH HMGAQFVTLE RDGKMVSGVR FLVYAPHAAA CSLIGAFNHW DGRRHPMQRL DYGIWGIFIP GLPEGTQYKF ELKGPHGEGL PHKADPWGFY AEQYPSFASV TYDHRRYQWQ DTAWQQRPVT EKRKQALSFY ELHVGSWKRG ENGEFLNYRE LADQLVPYLV EMGYTHVELM PVAEHPFYGS WGYQPVGLFA PTSRYGSPDD FKYFVDLCHQ AGIGVVLDWV PAHFPSDSHG LANFDGTPLF HDPDPRRGWH QDWNSYIYDL GREHVRRFLV ANALYWFEMF HIDGIRVDAV ASMLYLDYSR SHDQWIPNVD GGRENYDAIA TFKWMNEEVY KHFPNAMTIA EESTAFPGVS APTFMGGLGF GFKWNMGWMH DSLSYIKEDP VHRKYHHNTL TFPLIYAFSE NYVLSLSHDE VVYGKRSLMY KMPGDEWQQT ANLRAYLGYM YGQPGKKLNF MGTELGQTAE WDHDGQLQWF LTQFERHAGI QRLVRDLNHL YQAQTALHQL DCDPRCFEWR LQDNADLSVI AHERMDEAGN RVLVITNFTP VPQQAFRLGV PKTGKYRLLL NTDAKQYNGS DYPVLQDVST EAISSEGLDQ SLLLSVPPLA TLFYQWSAK
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