| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0116 |
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| Symbol | hcp-1 |
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| ID | 5135034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 132421 |
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| End bp | 132939 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530439 |
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| Product | hcp protein |
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| Protein accession | YP_001214957 |
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| Protein GI | 147671643 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 52 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACTC CATGTTATAT CTCTATCGAA GGCCAAACTC AGGGTCTTAT CACTGCAGGC
GCATGTACTG CTGACTCTAT CGGCGATTCA TTCGTTGAAG GCCACGAAGA TGAGATGCTG
GTTCAGCAGT TTGACCACGT CGTAACCGTA CCGACTGACC CACAATCTGG TCAGCCTTCA
GGCCAACGTG TGCACAAGCC ATTCAAATTC ACTGTGGCGC TGAACAAAGC GGTTCCTCTG
CTGTACAACG CGCTCTCTTC AGGTGAGAAG CTGAAGTCGG TTGAGCTGAA GTGGTACCGT
ACTTCTATCG AAGGTAAACA AGAAAACTTC TTTACCACTA AGCTGGAAAA CGCGTCTATC
ATCGATATCC ACTGTGAAAT GCCACACTGC CAAGACCCAG CAAAATCTGA CTTTACTCAG
AATGTGACTG TGTCTCTGTC TTACCGCAAA ATCACTTGGG ACCACGTTAA CGCGGGCACC
TCAGGCTCTG ATGACTGGCG TAAGCCAATC GAAGCGTAA
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| Protein sequence | MPTPCYISIE GQTQGLITAG ACTADSIGDS FVEGHEDEML VQQFDHVVTV PTDPQSGQPS
GQRVHKPFKF TVALNKAVPL LYNALSSGEK LKSVELKWYR TSIEGKQENF FTTKLENASI
IDIHCEMPHC QDPAKSDFTQ NVTVSLSYRK ITWDHVNAGT SGSDDWRKPI EA
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