| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0059 |
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| Symbol | |
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| ID | 5134025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 60352 |
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| End bp | 62187 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640530382 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001214900 |
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| Protein GI | 147672425 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00000176468 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAGCA CTCAATTGAA ATCAGAGAAA CTGAGTCTGG ATGCCATACA CCACTTCAAT
GGGCTTTGCG GTTCAGAGCT ACTTTCTCAA GCCACACAGT TTCTGCATAA AACGTTTAAT
AGCCACAGTT CAATGGTAAT TGAGCTCGAC AAAATGCGCT ATAAAGCACA CAACCTGTCT
TGTGCCAGTA TTGAACCCAG TGGTTTAGAG CCTGATTACG AATTGCATGG CACACCTTGT
GAGCAAGTCG GGTTAATGCA GCAACCTTAC TGCTTATTCA CACACCAAGT CGCCGAACGA
TTCCCTACCG ATGGCTATCT GGTAGAAAAC CAGATTGAAG CCTATCTTGG GATCCCGATT
TCGTTCTCCA ATGGTGAAAA CTACGGCATC CTGATCTCCA CCTTTACTCG CCCATTGGAA
CAGTACGATA ACTTAGTTTT GACCCATCAA ATTTTGGCTC AAATGATCGC CCATGATTTG
GAGTGCCAAC AGATCGCCGC TCGCTCGCAA AGTTTAGTCA ACCAACTACG CCATGAAATA
TCCCATGATA ATTTAACAGG TCTAATGAAT CGTAATGATT TGGCTGAGAA GCTGACCGCT
CTTGTTCAAG AAGACCGACA TCATTTCACC CTAGCCTTTC TTGATATTGA TGAGTTTCGT
TCGATAAACG ATCTGTATGG GCACTACTTA GGCGACCTTG TGTTGAAATT TGTCGCGGAT
GCGATAAAAC AAGCAGTCCC CGAAGAAGGA TACGCTTTTC GCATCGCCGC TGATGAATTT
GCGTTTTTGA CCACAGATCG TGAGCCGATG AAGATCTGCC AAACCATACT CAACAAGCTG
GCGCAAGATT ATATCGATCA AGATCGTCGC CTCAAAATCA GTGTCAGTAT TGGTATAGCC
AAGTACAGTG GTGAAAAACT CAATGCCGAT CAATTACTGT TCAATGCAAG TCTCGCTTTA
AAAGAGTGTA AACGGAACCA TAACACGCGC ATTCGTTTCT ATGACAACTT ACTCAGCAAT
CAATACTATC GGCGTACACA AATCATTGAA GCTTTGCGTA GTGAATTGAG TAAGCCAATT
CATCAAACTG AGCTGTATGT GGTCGTACAA CCGATCGTGA AAAAGCATCA AAGCAATTGG
GACTATTTTG AGATCTTAAC GCGTTGGAAT AGCAGTACGC TCGGTGTGGT GACACCACTG
GAATTCATTG AAGCAGCAGA GCAATCTGGC CTGATTGTCG AATTTGGCGA ACGTATTCTC
GAATTGGCCT GCATCGCGAA ACAAGAATTA GAACAAGGTA TTGACCAAAA AATTCGCTTA
AGCATCAACT GCTCCGCCGA TGAGCTAACG CATTCCAATC GTTACCTTGA GCATCTATTA
AAAACCATTA AAGCCTATGG TTTTCAAGCC GACGAGTTCA CCATTGAACT GACAGAAACG
GTTTTACTCT CTAAGGCCGC AGAAGTGTGC AGTATTCTCA CCATATTGCG TGAATTGGGT
TTTAAAATTG CCTTGGATGA CTTTGGAACA GGTTATTCGA GCCTTAACTA CATCCATAGT
TATCCGATTG ATTGCATCAA GATTGACGCA GCATTTGTGC GTAACTTACT TACCAACCAA
ACCTCTGAGA GTATCGTATG GTTGATTATT CAGCTTGCCA ACCAGCTTAA ACTCGATCTC
GTCGCTGAGG GGGTAGAGAA CCAACAAGCG CTGGATAAAC TCTATCAAAT GGGCTGTGAG
CAAATTCAAG GGTATTACTT CAGTCGACCT GATTTACCGA GTGTGATGAT TGAACGCTGG
CAAAAAGGGA CGAATGTAAC TCAAATGGCG AATTAA
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| Protein sequence | MTSTQLKSEK LSLDAIHHFN GLCGSELLSQ ATQFLHKTFN SHSSMVIELD KMRYKAHNLS
CASIEPSGLE PDYELHGTPC EQVGLMQQPY CLFTHQVAER FPTDGYLVEN QIEAYLGIPI
SFSNGENYGI LISTFTRPLE QYDNLVLTHQ ILAQMIAHDL ECQQIAARSQ SLVNQLRHEI
SHDNLTGLMN RNDLAEKLTA LVQEDRHHFT LAFLDIDEFR SINDLYGHYL GDLVLKFVAD
AIKQAVPEEG YAFRIAADEF AFLTTDREPM KICQTILNKL AQDYIDQDRR LKISVSIGIA
KYSGEKLNAD QLLFNASLAL KECKRNHNTR IRFYDNLLSN QYYRRTQIIE ALRSELSKPI
HQTELYVVVQ PIVKKHQSNW DYFEILTRWN SSTLGVVTPL EFIEAAEQSG LIVEFGERIL
ELACIAKQEL EQGIDQKIRL SINCSADELT HSNRYLEHLL KTIKAYGFQA DEFTIELTET
VLLSKAAEVC SILTILRELG FKIALDDFGT GYSSLNYIHS YPIDCIKIDA AFVRNLLTNQ
TSESIVWLII QLANQLKLDL VAEGVENQQA LDKLYQMGCE QIQGYYFSRP DLPSVMIERW
QKGTNVTQMA N
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