| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0056 |
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| Symbol | soxR |
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| ID | 5134464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 57408 |
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| End bp | 57854 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640530379 |
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| Product | soxR protein |
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| Protein accession | YP_001214897 |
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| Protein GI | 147672033 |
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| COG category | [K] Transcription |
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| COG ID | [COG0789] Predicted transcriptional regulators |
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| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.0560475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAGATGA CAGTAGGCGA AGTGGCGCAA AGAGCGGGCG TGAAGGTCTC AGCGTTGCAT
TTTTATGAAC AGAAAGGATT GATCCATAGT TGGCGTAATC AAGGCAATCA ACGGCGTTAC
GATCGTAGTG TACTGCGCAG GATCGCGGTG ATTAAGGCCG CACAAATGGT CGGACTGACC
TTAGAAGAGA TTGCCGAAGC TCTGGCACAT TTACCAAAAC ATGAAGCGCC CACTCGTCAA
GATTGGCAGC AAATGGCTTC TCATTGGCAC CATTTTCTCG ATCATCGGAT CCAACAATTA
AACGCATTGA AAGAGGACTT AAGCGGCTGC ATTGGCTGCG GATGTTTATC TCTTGAGTCT
TGTGCTATCT ACAATCCCAA AGATATTCGC GCTATGACTT TCGCGGATAA AACACGCTTA
TCGCATCCAG AAGAGTGGAG CCGTTAA
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| Protein sequence | MEMTVGEVAQ RAGVKVSALH FYEQKGLIHS WRNQGNQRRY DRSVLRRIAV IKAAQMVGLT
LEEIAEALAH LPKHEAPTRQ DWQQMASHWH HFLDHRIQQL NALKEDLSGC IGCGCLSLES
CAIYNPKDIR AMTFADKTRL SHPEEWSR
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