| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0055 |
|---|
| Symbol | |
|---|
| ID | 5134819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 56026 |
|---|
| End bp | 57228 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640530378 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001214896 |
|---|
| Protein GI | 147671678 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.319346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA ATAATACAAC GCGTGCGGGA TACTACCTTA CAGGACTGTT TTTTGATGGT
ATTTCGTCAG GACTATTTAT GATGGCATTA CCTTGGATGA TGCTCTCAAA ACCAAATCAG
GGCGCTTTTG TGGCGATAGT GGCTTTAGTT TGTACGGTGC TCTCTTTTCT TCTTACCCCA
TTTTTCTCAA CCTTAATTGA TCGCAGCTCT CGAAAACAGC TTCTGGTGTT GGTGCAGGCT
TTACAGGCCG GAACCGCTGT AGTGGTGGCG TTGTGTTATG GCGCGGGTTA TGACTCAATG
GGATTATTAG CAGCCGCTCA GCTCGTATTC TGGACATCGA GTAACTTGGC ATGGTCAGCT
AACAATGCGT TTACCCAAGA GCACTTTCAA CCCCACGAAT ACGCGTCCAT TTCAGGTAAA
CAAGAAGTGA TTATGCAAGC GACCACGCTG GGATCTGGCG CATTGGGGGT TGTACTGCTT
GAAATGTGGG GCATGTTTGA GTTTGCATGC TTTGCGGCTT TAGCTTCTGG GATCGCAATG
AGCAGTTATT TGTTGGCACC TTATCGTCGT CAATTACGAC AAACTCACTC GGCCTCTTTT
TTCGAACAAA TCAAAGAGAG CCGAGAGGTG TTTACTCTAC GCCCACAGTT TTACGCGTTT
CTCATGCTCT CGACGTTAAC CTACCCAATC TTAACGTTTC TGAGCAAGTT GGTGCCGATC
TGGTTTGCCG AGATGAATAT TTCAGGTGAT TGGTTTGCGG GTTATAACAT CGCTTTCGGT
ATGGGCTCTT TAGTCACTGG CCTGTTTGTG AGTCGGTTGC TTGGGATCAG TACGCATCCA
AAGATCATCA TCGGAGCCAT GCTATTGGCA ACGATGGCAT TGATTGGGAT GAGTTTGTCG
GCATCGCCGC AGTCACTGAT TCTCTGTACT TTTTTCTTTG GTACTTTTAA CGCCTTAAAT
CGGATTGCCC GCACGAATTG GATGCACTAT AGCGTCAACA TTGATCAGCG TGGGCGTGCC
GATGGTGGGT TACAAATGTT TTCGACTTTA GTGCAAAGTG TCAGTTATGT CGCCATTGCT
TTCCTAAGCC ATTTTGGGCT AACTCAGTTA GGTTTTATGT TGGCGGCGAT GGTGATGGTT
GCTGCCGTTT TTATGATGGT GCGACTTAAT GGTCGTATGA AGCTAAGCGC GGTGCTTGCC
TAA
|
|---|
| Protein sequence | MEKNNTTRAG YYLTGLFFDG ISSGLFMMAL PWMMLSKPNQ GAFVAIVALV CTVLSFLLTP
FFSTLIDRSS RKQLLVLVQA LQAGTAVVVA LCYGAGYDSM GLLAAAQLVF WTSSNLAWSA
NNAFTQEHFQ PHEYASISGK QEVIMQATTL GSGALGVVLL EMWGMFEFAC FAALASGIAM
SSYLLAPYRR QLRQTHSASF FEQIKESREV FTLRPQFYAF LMLSTLTYPI LTFLSKLVPI
WFAEMNISGD WFAGYNIAFG MGSLVTGLFV SRLLGISTHP KIIIGAMLLA TMALIGMSLS
ASPQSLILCT FFFGTFNALN RIARTNWMHY SVNIDQRGRA DGGLQMFSTL VQSVSYVAIA
FLSHFGLTQL GFMLAAMVMV AAVFMMVRLN GRMKLSAVLA
|
|---|
| |