| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0025 |
|---|
| Symbol | |
|---|
| ID | 5134966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 28664 |
|---|
| End bp | 29140 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640530348 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001214866 |
|---|
| Protein GI | 147671491 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 0.567085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACAAAG TGCTGTGGAT GCTGTTTGCC TTGACGGTGC TGACCGCGTG CAGTTCGTCG
GATAAGTACG AGCCTGCGAA AGAGCCGACC AAGGTGACTT TTAGCTTAGT CAGCGATGAA
GGGGTGAACC CGAACATCTG GGGTGAAGCG TCACCGATAG AAATTCAAGT TTTTGAGCTA
AAGGATGACT CGATGTTTAT GTCGTCCGAC TACGACCAGA TCAAAACCGA TTATAAAAAA
GCGCTGCGCA GTAACTTTGT TAAAAACTAC GACTATGTAC TGACTCCAGG GCAGTTCAAA
TTCGTCAACG CTTTCGAAGT CGATGAGGAG ACCAACTACA TCGGCGTGAT GGCTCATTTT
GCCGAGCCTG AACTCAGCGA ATGGAAGAAA GCGGTCAAGG TGATCAATAA AGGGCGAGAG
TATCACTTGC TGATGCTGTT TAAAGACTAC GATGTGAAAT TGGATAGGGT GGAATAA
|
|---|
| Protein sequence | MNKVLWMLFA LTVLTACSSS DKYEPAKEPT KVTFSLVSDE GVNPNIWGEA SPIEIQVFEL
KDDSMFMSSD YDQIKTDYKK ALRSNFVKNY DYVLTPGQFK FVNAFEVDEE TNYIGVMAHF
AEPELSEWKK AVKVINKGRE YHLLMLFKDY DVKLDRVE
|
|---|
| |