| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0021 |
|---|
| Symbol | clpB-2 |
|---|
| ID | 5134193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 23910 |
|---|
| End bp | 26519 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640530344 |
|---|
| Product | clpB protein |
|---|
| Protein accession | YP_001214862 |
|---|
| Protein GI | 147672171 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGTA TTGAATTACC CACTCTTATT GCAAAACTGA ATGCACAAAG CAAATTGGCT
CTGGAGCAAG CTGCCTCTCT CTGTATTGAG CGCCAACACC CTGAAGTCAC TCTAGAATAT
TATCTGGATG TGTTACTGGA TAATCCCCTC TCTGATGTGC GTCTCGTACT CAAGCAAGCG
GGGCTGGAAG TCGATCAGGT GAAACAGGCC ATCGCATCAA CCTATAGCCG TGAACAGGTC
TTGGATACCT ATCCAGCGTT TTCGCCACTG CTGGTCGAGT TACTGCAAGA AGCTTGGCTG
CTTTCCAGTA CCGAGTTAGA GCAGGCTGAG CTGCGTTCAG GGGCGATTTT CTTAGCCGCG
CTGACCCGTG CGGACCGTTA TCTGTCATTC AAATTGATCA GTTTGTTTGA AGGCATCAAC
CGCGAAAACC TCAAAAAACA CTTTGCGATG ATCTTAAGTG ATTCTGCAGA AACCGCAGTG
GCTAAAACAG ACAAAAATGC GGCCAATCCA CTGCAAGCCG CCGCAGAAAC ACCACTCGGA
CGCTTTTGCA CGAATGTGAC TGAGCAAGCC CGTAACGGTG AGCTTGATCC TGTCCTGAGC
CGTGAAAATG AACTCAACTT GATGGTGGAT ATTCTGTGCC GTCGCCGCAA AAACAACCCG
ATTGTGGTGG GTGAAGCAGG TGTTGGTAAA AGTGCCATGA TTGAAGGTTT GGCGCTGCGT
GTGGTGGCTG GCAAAGTGCC CACCCAACTG CAAAATGTAG AACTCTATTC GTTGGATCTT
GGTCGCTTGC AAGCGGGTGC ATCGGTGAAA GGCGAGTTCG AAAAGCGCCT AAAAGGGGTG
ATTGATGCGA TTAAGCAATC GCCTAAACCG ATCATTTTAT TCATCGATGA AGCGCACACC
TTAATTGGTT CTGGTAACCA AGAAGGGGGC AGTGATGCGG CAAACTTGCT CAAGCCTGCG
CTGGCGCGTG GTGAGTTAAG CACAGTGGCG GCGACGACGT GGAAAGAGTA CAAAAAGTAT
TTTGAAAAAG ATCCCGCGCT GACGCGCCGT TTCCAACTGG TCAAACTCGA TGAACCAACG
ATCGATCAAG CCGTCGATAT TCTGCGCGGT CTTAACAGTG TCTATGAAAA GGCACACAAC
GTACTGATCA CTGATGATGC ACTAAAAGCT GCCGCTGAAC TGTCAGCGCG TTACATCTCA
GGTCGTCAAC TGCCCGATAA AGCGATTGAT GTGCTGGATA CCGCTTGTGC GCGGATTGCG
ATCAATATGA CCACGCCACC TAAGCGTTTA GCGCTACTTG AAACCTTGTG CCATCAGCGT
CAACTCGAAA TTGACATGCT AGAGCGGGCG CAATTCCTTG GCCAAGAGGT CGATAGCGAG
CGCCTCGATG TTTTGCGTAA TCAAGAGTTG GCCGATGAAG CGGAAAAAGC CGCGTTGACA
CAGAGTTGGC AGCAGCAAAA AAGCTTGGTG GAGTCGATCA TCGCACTGCG TGCTGAGCTG
ATGGAGTTAA GCCAAGCGCA AGAGCAAGAT CCCGACCATT TATTGGTGGT GCGTACGGCG
CTGCAAGAGC AGTATCAAGC ACTCGATGCG ATTGATCATG CTGAGCGCTT GATGCACCCG
CAAGTCGATG CGGATCAGAT TGCTGAAGTG ATCGCCGATT GGACGGGCGT GCCTGTTGAT
CAGATGAACA CCGATGAGCT GCATAAAATC ACCCATTTGA CCTCGATTTT AGGCCAAGCG
ATCAAAGGCC AAGAAACGGC CATCGAACGT ATCCATCGTC ACTTACTGAC AGCGCGTGCC
GATCTGCGTC GTCCGGGACG TCCGAAAGGG GCATTCCTGC TGGTGGGGCC AAGCGGTGTA
GGTAAAACCG AAACGGTAGT GCAACTGGCA GAGCAGCTTT ACGGTGGTAA ACAGTTCCTC
ACCACCATCA ACATGTCGGA ATACCAAGAG AAACACACCG TTTCCCGCCT GATTGGTTCA
CCTCCGGGTT ATGTTGGCTA CGGTGAAGGC GGTGTGCTGA CGGAGGCTAT CCGTAAGATG
CCTTATTCGG TGGTTCTGCT TGATGAAGTC GAAAAAGCCC ATCCAGAAGT TTTAAATATC
TTCTACCAAG GCTTTGATAA AGGCGAAATC GCCGATGGTG AAGGTCGTGT CATCGACTGC
CAAAACATCG TGTTCTTCCT GACATCGAAC TTAGGCTACC AAACCATAGT CGATTATGCC
GATGAGCCCG CCAAGCTTGA TGAAGCGCTT TATCCTGAAT TGGCCGCTTT CTTTAAACCT
GCTCTGCTGG CGCGTATGGA AGTGATCCCT TACCTACCAC TGGGTAAAGA AGTGTTGGCA
CAGATTGTTC GCGGCAAGCT GGCTCGTCTC GAGAAACTGT TCAAGACACG TTACAACGCA
GAAGTGGTGA TTGAAGAGAG CTTAATTGAC GAAATCTTAA GCCGTGCGAC ACGCAGCGAA
AACGGTGCGC GTATGCTGGA GGCGATCATT GAAGGGCAAT TGCTGCCGCC CGTTTCATTG
GCGCTGCTGA ATAAACTCGC CGAGAGAGCG CCCGTTGAGC GCATTCGTTT AGCGGCAGAA
GCGGGTGAAT TTATCGGAGA GGTAGCGTAA
|
|---|
| Protein sequence | MIRIELPTLI AKLNAQSKLA LEQAASLCIE RQHPEVTLEY YLDVLLDNPL SDVRLVLKQA
GLEVDQVKQA IASTYSREQV LDTYPAFSPL LVELLQEAWL LSSTELEQAE LRSGAIFLAA
LTRADRYLSF KLISLFEGIN RENLKKHFAM ILSDSAETAV AKTDKNAANP LQAAAETPLG
RFCTNVTEQA RNGELDPVLS RENELNLMVD ILCRRRKNNP IVVGEAGVGK SAMIEGLALR
VVAGKVPTQL QNVELYSLDL GRLQAGASVK GEFEKRLKGV IDAIKQSPKP IILFIDEAHT
LIGSGNQEGG SDAANLLKPA LARGELSTVA ATTWKEYKKY FEKDPALTRR FQLVKLDEPT
IDQAVDILRG LNSVYEKAHN VLITDDALKA AAELSARYIS GRQLPDKAID VLDTACARIA
INMTTPPKRL ALLETLCHQR QLEIDMLERA QFLGQEVDSE RLDVLRNQEL ADEAEKAALT
QSWQQQKSLV ESIIALRAEL MELSQAQEQD PDHLLVVRTA LQEQYQALDA IDHAERLMHP
QVDADQIAEV IADWTGVPVD QMNTDELHKI THLTSILGQA IKGQETAIER IHRHLLTARA
DLRRPGRPKG AFLLVGPSGV GKTETVVQLA EQLYGGKQFL TTINMSEYQE KHTVSRLIGS
PPGYVGYGEG GVLTEAIRKM PYSVVLLDEV EKAHPEVLNI FYQGFDKGEI ADGEGRVIDC
QNIVFFLTSN LGYQTIVDYA DEPAKLDEAL YPELAAFFKP ALLARMEVIP YLPLGKEVLA
QIVRGKLARL EKLFKTRYNA EVVIEESLID EILSRATRSE NGARMLEAII EGQLLPPVSL
ALLNKLAERA PVERIRLAAE AGEFIGEVA
|
|---|
| |