| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0014 |
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| Symbol | vgrG-3 |
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| ID | 5134336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 12071 |
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| End bp | 15124 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640530337 |
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| Product | vgrG protein |
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| Protein accession | YP_001214855 |
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| Protein GI | 147671421 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGGT TACAGTTTCA ATTAAAGGTG GATGGCCTTG AGGATGAATC CCTCGTCGTA
CGCGGATTTG AAGGGCAAGA GTCCTTGTCT GATTCTGTAT GGCGCTGTGA ACCCTGCTAT
GGTTTTCGCT ATCAGGTTGA TTTAGCCAGT GCGCTAAGCA ACCTTACTGC TGAGCAATTT
GTCGACCAAA CCGCGCATTT AACCATTCTG CGTGACGGGC AAGTGGTGCA GCAAATTAAC
GGTATCGTAC GCCAATTGAG TAAAGGCGAT ACTGGGCATC GGCACACGTT TTATTCTCTT
ACGTTAGTAC CTGCGCTGGA GCGGCTTTCT TTACGCAGTA ATAGCCGTAT TTTCCAGCAG
CAAAGCGTGC CGGAAATTAT CTCTATTTTA CTGCAAGAGA TGGGGATTGA AGATTACGCC
TTTGCCCTTA AGCGTGAGTG TGCCCAGCGT GAGTTTTGTG TGCAGTACCG TGAAACGGAT
TTGCAGTTTT TACACCGTAT CGCCGCCGAA GAAGGCTTGG TATACAGTCA CCTACATGAA
GCGCAGAAAC ACACGCTACT GTTTACCGAT AGCTCGGACA GCCAACCGAA GTTAGCCAAG
CCAGTACCTT ATAATGCGCT GGCGGGTGGC GAGATCAATC TCCCTTATGT GGTCGATCTG
CAATTCAAGA CCACCGCACA AGTCAGCCAT ACCGAGCTAA AGGATTACAG CTTTAAAAAG
CCAGCTTACG GATTTACTCA GCGCACGCAG GGTAAAGATA TCGCTTATCA GCAGCCAAAT
TATGAGCATT TTGATGCTCC GGGACGCTAC AAAGACGATG CAAATGGCAA GGCCTTTAGC
CAAATTCGCT TAGAGTATTT ACGTCGCGAT GCTTTGCTTG CTGATGCGAA GAGTGACGAA
CCTTTGCTGT TGGCGGGAGT GCGTTTTGAC TTGCAAGATC ACCTTGATCA CGCAATGAAT
CGAGATTGGC TCGTGGTACA AGCCAATCAC CAAGGGACGC AGCCACAAGC GTTACAAGAA
GAGGGTGGTT CAGGCGCTAC CACTTACAGC AATCAGCTAA AACTTATTCC CGCTCACATC
ACTTGGCGAG CAAGGCCTTG TGCTAAGCCG CAAGTGGATG GTCCCATGAT CGCCACCGTG
GTTGGGCCAC AAGGTGAAGA GATTTATTGC GATAACTTTG GTCGCGTGAA AGTGCATTTC
CCGTGGGATC GCTACTCAAG TAGCAACGAA AAAAGCTCTT GCTGGGTGCG AGTGGCACAA
GAATGGGCTG GTAGCCAATA CGGTAGTATG GCGATTCCGC GAGTTGGCCA TGAAGTGATT
GTTTCGTTCC TGAATGGCGA TCCGGATCAA CCCATCATCA CAGGTCGTAC GTATCATGCG
ACCAATACCG CGCCTTACGC CTTGCCTGAC CACAAAACCA AAACCGTGCT GCGCACTGAG
ACTCACCAAG GGCAAGGCTA CAACGAACTG AGTTTTGAGG ATCAAGCGGG CAGCGAACAG
ATTTTGCTGC ATGCACAAAA AGATTGGGAT GCGTTGATTG AGCATGATCA CACCGAAGTG
ATTCGCCACG ATCAACATCT CACTGTGGAC AATGATCGCT TTACCCGCAT TCAGCGCAAC
CAACATTTAA CGGTTGAAGG TGAAGTCCGT AGCAAAATCG CACTCGATAG CAGCCATGAA
GTCGGCGCGT CACTACAACA CAAAGTCGGG CAGCGCATTG CTGTCGAGGC GGGTAAAGAG
ATTTCACTCA AAAGCGGCGC AAAAATCGTG GTTGAAGCCG GAGCGGAGTT AACCCTAAAA
GCTGGGGGCA GTTTTGTAAA AGTCGATGCT GGTGGCGTGC ACTTAGTCGG TCCTGCCATT
AACCTAAACG CGGGCGGCAG TGCAGGCAGC GGTAGCGCTT ATGGCGGGCA ATTAGCGGCA
GCACCGAGAA TGTTAGCGCA AGCTAAACCA GTAGCAGAAT TGGTTCAGCC GGATATTGCG
GCCTCAATGC AATCAGGCGC GGCGCGTGTT ATTGATGTGG CATCACTCCC CACAATGATG
CCGAGTTCAG CCAATAACAC GGCAAATGAT GAGCCTGTGG CCGAAGAGAA AACACCGGAG
CGAATTTTAA AATCCGATCT CCTCAAACCA TCCGATGAGT TAGAGAAACT CGCCAAGCGA
CAAGCGAGTG CTTATCGTCA AGGTAATCAC AGCGATGAGG TTAAGTTACT ACAAGAAGCG
CTCATAAAAT TGGGGTTTGA TCTCGGGAAA GCAGGAGCTG ATGGTGACTT TGGGAGCAAA
ACTAAAACCG CGATTGAGCA GTTCCAGAAA AGCTATCAAC CAAGCCACCA AACCCACCCG
TCTTACAGCA TTGGCGCTGT TGACGGTATT GTCGGCAAAG GTACACTACT GGCACTAGAC
GAAGCCTTGA TGGATGGGTG GGTGTATGAG AATAATATTT ATCAAATATG GCCTCTAGGT
AAAACGTCAG AGAAATATGA GTCGGCAGGA AGAGGCCCAG GGGTTATATC AACAGGAAAT
GGAGATTATG GTGGGGCTTC ATATGGTTGC TATCAAATGT CATCAAATCT TGGTGTGGTA
CAAAAATATA TTCAGTCATC AAAATTCAAA GAATTCTTTA GTGGATTAAA TCCCGCTACG
AAAGAGTTTA ATGTTGTTTG GCAGGATATA GCTTCAAGAT ATCCTCAGGA ATTCAGAGAA
GAACAACACC AATTTATTAA GAGAATTCAT TATGATATAC AAATAGGACA TCTTAGAGGG
AAAGGACTTT TGTTTGAACA TAATCGAGCT GCTGTACATG ATTTGATCTG GTCTACTTCA
GTACAGTTTG GTGGGAGAAC TAATTTGATT TTCAATGCAT TGAATGGACA AAATATGGAA
AGTATGACTG ATAAGGACAT CATTATTCTG GTACAAGATT ACAAGCTTGT TAATACAGAA
AGGCTTTTTA AGTCTTCGCC ATCATGGTGG AGTGATTTAA AAAAACGTGC GGTATCAGAG
AAAAAAGCTT TACTTGAACT AGAAATTGAC GGTTTGGAGG TTGATATAAA ATGA
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| Protein sequence | MARLQFQLKV DGLEDESLVV RGFEGQESLS DSVWRCEPCY GFRYQVDLAS ALSNLTAEQF
VDQTAHLTIL RDGQVVQQIN GIVRQLSKGD TGHRHTFYSL TLVPALERLS LRSNSRIFQQ
QSVPEIISIL LQEMGIEDYA FALKRECAQR EFCVQYRETD LQFLHRIAAE EGLVYSHLHE
AQKHTLLFTD SSDSQPKLAK PVPYNALAGG EINLPYVVDL QFKTTAQVSH TELKDYSFKK
PAYGFTQRTQ GKDIAYQQPN YEHFDAPGRY KDDANGKAFS QIRLEYLRRD ALLADAKSDE
PLLLAGVRFD LQDHLDHAMN RDWLVVQANH QGTQPQALQE EGGSGATTYS NQLKLIPAHI
TWRARPCAKP QVDGPMIATV VGPQGEEIYC DNFGRVKVHF PWDRYSSSNE KSSCWVRVAQ
EWAGSQYGSM AIPRVGHEVI VSFLNGDPDQ PIITGRTYHA TNTAPYALPD HKTKTVLRTE
THQGQGYNEL SFEDQAGSEQ ILLHAQKDWD ALIEHDHTEV IRHDQHLTVD NDRFTRIQRN
QHLTVEGEVR SKIALDSSHE VGASLQHKVG QRIAVEAGKE ISLKSGAKIV VEAGAELTLK
AGGSFVKVDA GGVHLVGPAI NLNAGGSAGS GSAYGGQLAA APRMLAQAKP VAELVQPDIA
ASMQSGAARV IDVASLPTMM PSSANNTAND EPVAEEKTPE RILKSDLLKP SDELEKLAKR
QASAYRQGNH SDEVKLLQEA LIKLGFDLGK AGADGDFGSK TKTAIEQFQK SYQPSHQTHP
SYSIGAVDGI VGKGTLLALD EALMDGWVYE NNIYQIWPLG KTSEKYESAG RGPGVISTGN
GDYGGASYGC YQMSSNLGVV QKYIQSSKFK EFFSGLNPAT KEFNVVWQDI ASRYPQEFRE
EQHQFIKRIH YDIQIGHLRG KGLLFEHNRA AVHDLIWSTS VQFGGRTNLI FNALNGQNME
SMTDKDIIIL VQDYKLVNTE RLFKSSPSWW SDLKKRAVSE KKALLELEID GLEVDIK
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