Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0014 |
Symbol | vgrG-3 |
ID | 5134336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 12071 |
End bp | 15124 |
Gene Length | 3054 bp |
Protein Length | 1017 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640530337 |
Product | vgrG protein |
Protein accession | YP_001214855 |
Protein GI | 147671421 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAGGT TACAGTTTCA ATTAAAGGTG GATGGCCTTG AGGATGAATC CCTCGTCGTA CGCGGATTTG AAGGGCAAGA GTCCTTGTCT GATTCTGTAT GGCGCTGTGA ACCCTGCTAT GGTTTTCGCT ATCAGGTTGA TTTAGCCAGT GCGCTAAGCA ACCTTACTGC TGAGCAATTT GTCGACCAAA CCGCGCATTT AACCATTCTG CGTGACGGGC AAGTGGTGCA GCAAATTAAC GGTATCGTAC GCCAATTGAG TAAAGGCGAT ACTGGGCATC GGCACACGTT TTATTCTCTT ACGTTAGTAC CTGCGCTGGA GCGGCTTTCT TTACGCAGTA ATAGCCGTAT TTTCCAGCAG CAAAGCGTGC CGGAAATTAT CTCTATTTTA CTGCAAGAGA TGGGGATTGA AGATTACGCC TTTGCCCTTA AGCGTGAGTG TGCCCAGCGT GAGTTTTGTG TGCAGTACCG TGAAACGGAT TTGCAGTTTT TACACCGTAT CGCCGCCGAA GAAGGCTTGG TATACAGTCA CCTACATGAA GCGCAGAAAC ACACGCTACT GTTTACCGAT AGCTCGGACA GCCAACCGAA GTTAGCCAAG CCAGTACCTT ATAATGCGCT GGCGGGTGGC GAGATCAATC TCCCTTATGT GGTCGATCTG CAATTCAAGA CCACCGCACA AGTCAGCCAT ACCGAGCTAA AGGATTACAG CTTTAAAAAG CCAGCTTACG GATTTACTCA GCGCACGCAG GGTAAAGATA TCGCTTATCA GCAGCCAAAT TATGAGCATT TTGATGCTCC GGGACGCTAC AAAGACGATG CAAATGGCAA GGCCTTTAGC CAAATTCGCT TAGAGTATTT ACGTCGCGAT GCTTTGCTTG CTGATGCGAA GAGTGACGAA CCTTTGCTGT TGGCGGGAGT GCGTTTTGAC TTGCAAGATC ACCTTGATCA CGCAATGAAT CGAGATTGGC TCGTGGTACA AGCCAATCAC CAAGGGACGC AGCCACAAGC GTTACAAGAA GAGGGTGGTT CAGGCGCTAC CACTTACAGC AATCAGCTAA AACTTATTCC CGCTCACATC ACTTGGCGAG CAAGGCCTTG TGCTAAGCCG CAAGTGGATG GTCCCATGAT CGCCACCGTG GTTGGGCCAC AAGGTGAAGA GATTTATTGC GATAACTTTG GTCGCGTGAA AGTGCATTTC CCGTGGGATC GCTACTCAAG TAGCAACGAA AAAAGCTCTT GCTGGGTGCG AGTGGCACAA GAATGGGCTG GTAGCCAATA CGGTAGTATG GCGATTCCGC GAGTTGGCCA TGAAGTGATT GTTTCGTTCC TGAATGGCGA TCCGGATCAA CCCATCATCA CAGGTCGTAC GTATCATGCG ACCAATACCG CGCCTTACGC CTTGCCTGAC CACAAAACCA AAACCGTGCT GCGCACTGAG ACTCACCAAG GGCAAGGCTA CAACGAACTG AGTTTTGAGG ATCAAGCGGG CAGCGAACAG ATTTTGCTGC ATGCACAAAA AGATTGGGAT GCGTTGATTG AGCATGATCA CACCGAAGTG ATTCGCCACG ATCAACATCT CACTGTGGAC AATGATCGCT TTACCCGCAT TCAGCGCAAC CAACATTTAA CGGTTGAAGG TGAAGTCCGT AGCAAAATCG CACTCGATAG CAGCCATGAA GTCGGCGCGT CACTACAACA CAAAGTCGGG CAGCGCATTG CTGTCGAGGC GGGTAAAGAG ATTTCACTCA AAAGCGGCGC AAAAATCGTG GTTGAAGCCG GAGCGGAGTT AACCCTAAAA GCTGGGGGCA GTTTTGTAAA AGTCGATGCT GGTGGCGTGC ACTTAGTCGG TCCTGCCATT AACCTAAACG CGGGCGGCAG TGCAGGCAGC GGTAGCGCTT ATGGCGGGCA ATTAGCGGCA GCACCGAGAA TGTTAGCGCA AGCTAAACCA GTAGCAGAAT TGGTTCAGCC GGATATTGCG GCCTCAATGC AATCAGGCGC GGCGCGTGTT ATTGATGTGG CATCACTCCC CACAATGATG CCGAGTTCAG CCAATAACAC GGCAAATGAT GAGCCTGTGG CCGAAGAGAA AACACCGGAG CGAATTTTAA AATCCGATCT CCTCAAACCA TCCGATGAGT TAGAGAAACT CGCCAAGCGA CAAGCGAGTG CTTATCGTCA AGGTAATCAC AGCGATGAGG TTAAGTTACT ACAAGAAGCG CTCATAAAAT TGGGGTTTGA TCTCGGGAAA GCAGGAGCTG ATGGTGACTT TGGGAGCAAA ACTAAAACCG CGATTGAGCA GTTCCAGAAA AGCTATCAAC CAAGCCACCA AACCCACCCG TCTTACAGCA TTGGCGCTGT TGACGGTATT GTCGGCAAAG GTACACTACT GGCACTAGAC GAAGCCTTGA TGGATGGGTG GGTGTATGAG AATAATATTT ATCAAATATG GCCTCTAGGT AAAACGTCAG AGAAATATGA GTCGGCAGGA AGAGGCCCAG GGGTTATATC AACAGGAAAT GGAGATTATG GTGGGGCTTC ATATGGTTGC TATCAAATGT CATCAAATCT TGGTGTGGTA CAAAAATATA TTCAGTCATC AAAATTCAAA GAATTCTTTA GTGGATTAAA TCCCGCTACG AAAGAGTTTA ATGTTGTTTG GCAGGATATA GCTTCAAGAT ATCCTCAGGA ATTCAGAGAA GAACAACACC AATTTATTAA GAGAATTCAT TATGATATAC AAATAGGACA TCTTAGAGGG AAAGGACTTT TGTTTGAACA TAATCGAGCT GCTGTACATG ATTTGATCTG GTCTACTTCA GTACAGTTTG GTGGGAGAAC TAATTTGATT TTCAATGCAT TGAATGGACA AAATATGGAA AGTATGACTG ATAAGGACAT CATTATTCTG GTACAAGATT ACAAGCTTGT TAATACAGAA AGGCTTTTTA AGTCTTCGCC ATCATGGTGG AGTGATTTAA AAAAACGTGC GGTATCAGAG AAAAAAGCTT TACTTGAACT AGAAATTGAC GGTTTGGAGG TTGATATAAA ATGA
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Protein sequence | MARLQFQLKV DGLEDESLVV RGFEGQESLS DSVWRCEPCY GFRYQVDLAS ALSNLTAEQF VDQTAHLTIL RDGQVVQQIN GIVRQLSKGD TGHRHTFYSL TLVPALERLS LRSNSRIFQQ QSVPEIISIL LQEMGIEDYA FALKRECAQR EFCVQYRETD LQFLHRIAAE EGLVYSHLHE AQKHTLLFTD SSDSQPKLAK PVPYNALAGG EINLPYVVDL QFKTTAQVSH TELKDYSFKK PAYGFTQRTQ GKDIAYQQPN YEHFDAPGRY KDDANGKAFS QIRLEYLRRD ALLADAKSDE PLLLAGVRFD LQDHLDHAMN RDWLVVQANH QGTQPQALQE EGGSGATTYS NQLKLIPAHI TWRARPCAKP QVDGPMIATV VGPQGEEIYC DNFGRVKVHF PWDRYSSSNE KSSCWVRVAQ EWAGSQYGSM AIPRVGHEVI VSFLNGDPDQ PIITGRTYHA TNTAPYALPD HKTKTVLRTE THQGQGYNEL SFEDQAGSEQ ILLHAQKDWD ALIEHDHTEV IRHDQHLTVD NDRFTRIQRN QHLTVEGEVR SKIALDSSHE VGASLQHKVG QRIAVEAGKE ISLKSGAKIV VEAGAELTLK AGGSFVKVDA GGVHLVGPAI NLNAGGSAGS GSAYGGQLAA APRMLAQAKP VAELVQPDIA ASMQSGAARV IDVASLPTMM PSSANNTAND EPVAEEKTPE RILKSDLLKP SDELEKLAKR QASAYRQGNH SDEVKLLQEA LIKLGFDLGK AGADGDFGSK TKTAIEQFQK SYQPSHQTHP SYSIGAVDGI VGKGTLLALD EALMDGWVYE NNIYQIWPLG KTSEKYESAG RGPGVISTGN GDYGGASYGC YQMSSNLGVV QKYIQSSKFK EFFSGLNPAT KEFNVVWQDI ASRYPQEFRE EQHQFIKRIH YDIQIGHLRG KGLLFEHNRA AVHDLIWSTS VQFGGRTNLI FNALNGQNME SMTDKDIIIL VQDYKLVNTE RLFKSSPSWW SDLKKRAVSE KKALLELEID GLEVDIK
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