Gene VC0395_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0006 
SymbolrbsR 
ID5134250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp5055 
End bp6059 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content50% 
IMG OID640530329 
Productribose operon repressor 
Protein accessionYP_001214847 
Protein GI147671890 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.038565 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACCA TGAAGGATAT CGCTCGACTT GCTGGCGTCT CCACTTCAAC CGTAAGCCAT 
GTGATCAATA AGAGTCGTTT TGTGAGTGAT GAAATTGCTG AGCGGGTGAA TAACGCCGCT
CAGCAACTCA ATTACGCCCC CTCCGCTCTC GCGCGTAGCC TCAAAATGAA CCGCACCAAA
ACCATTGGCA TGTTAGTGAC CACCTCGACC AACCCATTTT TTGGTGAAGT GGTAAAAGGC
GTAGAGCGAA GCTGTTATCA CCAAGGCTAC AACCTAATCT TGTGCAATAC CGAAGGGGAT
AACCAACGCA TGAAAGCCAG CATCAACACC TTGCTGCAAA AGCGTGTCGA TGGTTTGCTG
CTGATGTGCT CAACCCTTGA GGGTGAAAGG TTGGATGTGT TTGACCGCTA TCCCGACATT
CCTATTGTGG TCATGGACTG GGGCCCGATC CTTTTTGCGA GTGACAAAAT TCAAGACAAC
TCACTGCAAG GTGGCTACAT GGCGGCCAAG CATCTGATTG AGTGTGGGCA TAAAGAGATT
GGTTGTATCA CAGGTCCGCT GATTCGCCAC CAAGCACAGA TGCGTTATGA AGGTTACAAA
CGTGCGCTCG CGGAAGCGGG AATTGCCATT AATCCAGATT GGATTGTGGA ATCTGACTTC
GAGTGTGAAG GTGGTTACCA AGCCTTTGAA AAACTCTATC AGCGTGGCAA ATTGCCCAGT
GCTTTGTTTG TTTCCAATGA CATGATGGCG ATGGGCGTGA TTCAAGCCGC TAGCCAACGA
GGTTTGCGAG TGCCGGACGA TCTTTCCTTG ATTGGCTACG ATGATGTGCA TATCGCTAAG
TTTATGACCC CGGCGTTAAC CACCATCCAT CAACCCAAAT ACCGCCTCGG CAAAGCCGCT
GTGGATACCC TGCTTTATCG GTTGGAAAAT CCAGACACCA CTGCGCAAGT GGTACAGTTA
GAGCCGACTT TAGTGGTGCG TAATAGTGTA CGAAAACTCG GCTAG
 
Protein sequence
MATMKDIARL AGVSTSTVSH VINKSRFVSD EIAERVNNAA QQLNYAPSAL ARSLKMNRTK 
TIGMLVTTST NPFFGEVVKG VERSCYHQGY NLILCNTEGD NQRMKASINT LLQKRVDGLL
LMCSTLEGER LDVFDRYPDI PIVVMDWGPI LFASDKIQDN SLQGGYMAAK HLIECGHKEI
GCITGPLIRH QAQMRYEGYK RALAEAGIAI NPDWIVESDF ECEGGYQAFE KLYQRGKLPS
ALFVSNDMMA MGVIQAASQR GLRVPDDLSL IGYDDVHIAK FMTPALTTIH QPKYRLGKAA
VDTLLYRLEN PDTTAQVVQL EPTLVVRNSV RKLG