Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0006 |
Symbol | rbsR |
ID | 5134250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 5055 |
End bp | 6059 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640530329 |
Product | ribose operon repressor |
Protein accession | YP_001214847 |
Protein GI | 147671890 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.038565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCA TGAAGGATAT CGCTCGACTT GCTGGCGTCT CCACTTCAAC CGTAAGCCAT GTGATCAATA AGAGTCGTTT TGTGAGTGAT GAAATTGCTG AGCGGGTGAA TAACGCCGCT CAGCAACTCA ATTACGCCCC CTCCGCTCTC GCGCGTAGCC TCAAAATGAA CCGCACCAAA ACCATTGGCA TGTTAGTGAC CACCTCGACC AACCCATTTT TTGGTGAAGT GGTAAAAGGC GTAGAGCGAA GCTGTTATCA CCAAGGCTAC AACCTAATCT TGTGCAATAC CGAAGGGGAT AACCAACGCA TGAAAGCCAG CATCAACACC TTGCTGCAAA AGCGTGTCGA TGGTTTGCTG CTGATGTGCT CAACCCTTGA GGGTGAAAGG TTGGATGTGT TTGACCGCTA TCCCGACATT CCTATTGTGG TCATGGACTG GGGCCCGATC CTTTTTGCGA GTGACAAAAT TCAAGACAAC TCACTGCAAG GTGGCTACAT GGCGGCCAAG CATCTGATTG AGTGTGGGCA TAAAGAGATT GGTTGTATCA CAGGTCCGCT GATTCGCCAC CAAGCACAGA TGCGTTATGA AGGTTACAAA CGTGCGCTCG CGGAAGCGGG AATTGCCATT AATCCAGATT GGATTGTGGA ATCTGACTTC GAGTGTGAAG GTGGTTACCA AGCCTTTGAA AAACTCTATC AGCGTGGCAA ATTGCCCAGT GCTTTGTTTG TTTCCAATGA CATGATGGCG ATGGGCGTGA TTCAAGCCGC TAGCCAACGA GGTTTGCGAG TGCCGGACGA TCTTTCCTTG ATTGGCTACG ATGATGTGCA TATCGCTAAG TTTATGACCC CGGCGTTAAC CACCATCCAT CAACCCAAAT ACCGCCTCGG CAAAGCCGCT GTGGATACCC TGCTTTATCG GTTGGAAAAT CCAGACACCA CTGCGCAAGT GGTACAGTTA GAGCCGACTT TAGTGGTGCG TAATAGTGTA CGAAAACTCG GCTAG
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Protein sequence | MATMKDIARL AGVSTSTVSH VINKSRFVSD EIAERVNNAA QQLNYAPSAL ARSLKMNRTK TIGMLVTTST NPFFGEVVKG VERSCYHQGY NLILCNTEGD NQRMKASINT LLQKRVDGLL LMCSTLEGER LDVFDRYPDI PIVVMDWGPI LFASDKIQDN SLQGGYMAAK HLIECGHKEI GCITGPLIRH QAQMRYEGYK RALAEAGIAI NPDWIVESDF ECEGGYQAFE KLYQRGKLPS ALFVSNDMMA MGVIQAASQR GLRVPDDLSL IGYDDVHIAK FMTPALTTIH QPKYRLGKAA VDTLLYRLEN PDTTAQVVQL EPTLVVRNSV RKLG
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