| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1324 |
|---|
| Symbol | |
|---|
| ID | 5132282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 1288888 |
|---|
| End bp | 1290264 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640530258 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001214779 |
|---|
| Protein GI | 147669961 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00452452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATAG AATTTACGTT TGATAGTCTG GTTATGGCGG CTATTGTAGC AGCTATTGCC
CTTGTCCTGT TTTTTTTGGT GAACAAATTG TTTTCCAGAT ATATCCGGAA AGATGAAGAA
GGGAAAAAAG TAAGTTTACT TAGGAAGGCA CTCAAAGCAG TCCGTTTACC GGTTTTGCTG
GTTATTTGGT GCATTGCTTT GTATATCATA TTTGAAAATC TGACTATTCA AGTTGATCTT
AGCAAACAGA TTTCTAAAGC CCTTGAATTA CTTATGGCAG CCCTGACGCT TTGGATTGGG
GCCGGGCTGA TAGAAGGGTT GCTTAGCTGG CTTAAAACAG AAATACCCGG CAAAGCCAAT
TCACAGGTAA ATGACCATAT TATAGACAGC CTTCGTTTTG TAGTGCCATT GTTGGCAGTA
CTGACTCTGG TAGTTGCGGG TATAGGAATA TACGGGGTGG CAGCAGACGG GCTGACCGTT
TGGCTGGGTA CCCACGGAGT CAAACTGTTA CTTATCATAG GTTTGATTAT TGCCGGTGTT
TATGCTGTCA GCCGGGGCGT ACCGGCGCTT ATCCGTGGAA TTATATATGG CGGGGTTGCC
AAACCCAAAG AAGAAGCTAA AAAACGGGCG GATACCCTTA TCGGGGTGGC TGTATCTACT
GCAGAGGTAG TGGTAGTGGC TATGGGGGCT TTTGTGGCCC TGTCTGAGGT GGGGTTGGAT
ATCGGGCCTA TACTGGCCGG TGTCGGTGTT TTGGGTGTGG CTATCGGCTT TGGTGCCCAG
AGTTTGGTTA AGGATTACCT TTCAGGTTTG TTTATAATAC TGGAAAACCA GTATTCGGTG
GGAGACGTTA TCAAGGTAAT GGATGTAGTG GGTGAGGTGG AATTTATAGA CCTTCGCCGT
ACCATTGTGC GTGATCTGGA CGGGGTGGTG CACGTAGTTT CCAACGGTGA AATACGGATA
ACCAGCAACT ACACCAAGTA TCTTTCACGG GTTAATTTTG ATATCAGTAT CGGCTATCAG
GAAGATATAA ACCATGCCAT AGATGTTATA AACAAGGTGT GTGCCGAATT TACCAGTGAA
CCCGAATGGA ATAAATCCGT AGTCAAAAAT TCACTGGGAG TACTCAGAGT GAACAAACTG
GGTGACTCTG GGGTGGATAT AAAAGTGTTG GGTGACGTCA AGCCGGGTAC TCAGTGGGCT
ATAAAAGGAG AGCTTCGCAA GCGGATAAAG ATTGCCTTTG ATCGTGAACA TATTGAAATA
CCCTGGCCGC ATACCAAGGT CTTCTTTGGC AATGCTTTGC CGGGTTCGAA GATGCAAATT
GCTAAAGTGT CGGGCGAAGA ACTTCCGGAA GCTGAATCTG AACCGGAGTC AGAGTAG
|
|---|
| Protein sequence | MLIEFTFDSL VMAAIVAAIA LVLFFLVNKL FSRYIRKDEE GKKVSLLRKA LKAVRLPVLL
VIWCIALYII FENLTIQVDL SKQISKALEL LMAALTLWIG AGLIEGLLSW LKTEIPGKAN
SQVNDHIIDS LRFVVPLLAV LTLVVAGIGI YGVAADGLTV WLGTHGVKLL LIIGLIIAGV
YAVSRGVPAL IRGIIYGGVA KPKEEAKKRA DTLIGVAVST AEVVVVAMGA FVALSEVGLD
IGPILAGVGV LGVAIGFGAQ SLVKDYLSGL FIILENQYSV GDVIKVMDVV GEVEFIDLRR
TIVRDLDGVV HVVSNGEIRI TSNYTKYLSR VNFDISIGYQ EDINHAIDVI NKVCAEFTSE
PEWNKSVVKN SLGVLRVNKL GDSGVDIKVL GDVKPGTQWA IKGELRKRIK IAFDREHIEI
PWPHTKVFFG NALPGSKMQI AKVSGEELPE AESEPESE
|
|---|
| |