| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1265 |
|---|
| Symbol | |
|---|
| ID | 5131556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 1237601 |
|---|
| End bp | 1241113 |
|---|
| Gene Length | 3513 bp |
|---|
| Protein Length | 1170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640530196 |
|---|
| Product | DNA polymerase III catalytic subunit, DnaE type |
|---|
| Protein accession | YP_001214722 |
|---|
| Protein GI | 147669904 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTGTC ATCTTCATGT CCACACCGAA TTCAGCCTGC TGGACGGCAT GTGCCGTATT
TCCCAGCTGG TAGTCCGCGC CAAGGAACTT GGCATGGAGG CACTGGCTAT TACTGACCAC
GGCACTATGC ATGGCATTCC CCGTTTTTAC AAAGAAGCCA AAGAGGCAGG CATAAAACCC
ATACTGGGCA GCGAATTTTA TCTGGCATAT GGTGACCGCA CCGCCAAAAC TGCGGCAGAC
AAAAACTACT ACCATCTGGT ACTGTTGGCT AAAAATAATA AAGGCTACCA TAACCTTATT
CAGCTTAGCT CGCGTTCGCA TCTGGAGGGC TTTTACTACA AACCCCGTAT AGATAAAGAA
CTGCTTGAGA AATATTCAGA AGGGCTGGTT TGCCTTTCGG CCTGCCCGTC GGGTGAAGTA
CCCCGCCTGA TACTGGAAAA CCGCTATGAT GAGGCCAGAG AAGCCGCCCT GTGGTACAAG
AAAACTTTTG AAAACTACTA TATAGAAATC CAGCGCCACC CCATGCCTGA TTTGGAAAAG
ATAAACAGCG TCCTTATACC TATGGCACGG GAGCTGGATA TTCCCTTGGT AGCTACCAAC
GATACCCACT ATCTGGACAA GGAAGATGCC CCCTACCATG ATTTGCTGCT TTGCATAGGC
ACAAATGCAC TGGTCAGTGA CGAAAAGCGG ATGAAGATGG AGGGGGAATA TTTTTACCTG
AAATCCCCTC AGGAAATGGC GGAAGCCTAT CAAGATATAC CTGATGCAAT TGAAAACACC
GCCAAAATAG CTGAGATGTG CAATGTCAGC CTGGACTTCG GGCGTCTGCA CCTGCCGGAG
ATAGATATAC CCAAAGGCAA AACCCCTGAT GAGTATCTGG CAGACTTGTG CTATGAAGGA
TTGCCAGTTT TTTACCCTGA TGCCGGCCCG GAGATACTTG ATCGCCTGAA GTACGAACTG
GATGTTATCA AAACCACCGA GTTTGCCAAT TACTTTCTGG TTACCTGGGA TATCATCCGT
TTTGTAAAAG AAAAAGGGTT GTATTATGGT GTCCGTGGCA GTGCCGCTTC GTCCATAGTG
CTTTACTGTC TAGGCATAAC CGCCCTTGAC CCCATCAAAT ACAAACTGGT TTTTGAGCGT
TTTCTTAATA TTGAACGCAA GGAAATGCCT GATATTGATA TGGACTTTCA GGATGACCGC
CGCGAGGAGG TTATTGAATA CGTTGTCGGC AAGTACGGGC GTGACCATGT TTCCCAGATT
ATTACCTTTG GTACGCTGGG GGCAAAAGCG GCCGTGCGGG ATGTGGGACG GGCACTTGGC
ATGGCCTATG CCGATGTGGA TAGGGTAGCC AAGGTTATAC CTTTCTCCCC TCACATGACT
CTGGACAAGG CTATGGAAGA AAGCTCCGAG CTCAAGGAAA TGTACAATCA AGATGCCGTT
GTCCGCAACC TGGTGGATGC CGCCCGCAAG GTGGAGGGTC TTTCCCGTCA TGCTTCCACC
CATGCTGCCG GCGTAGTCAT TTCCAAAGAC CCCTTGACAG ACCATGTACC CCTGCAGCGC
CTCAGCAAGG AGAATAATCT GGGGCTGGTC ATGACCCAGT ACACCATGGA AGACATAGCC
AAAATAGGTT TGCTCAAGAT GGACTTTCTG GGTTTGGTTA ACCTGAATAT ACTGGGCAAG
GCTTGTGCGG TAATCAAAGA ATACACCGGA CAGGATATCG ACCCCTTGGC CATACCCCTT
GACGACCAAA AGACCTTTGA ACTGCTGGCA GCCGGCGAAA CAGTGGGTGT TTTTCAGCTG
GAAGGTACGG GTATGCGCCG CTATATCAAA GAACTGAAAC CGACAGTGTT TTCAGATATT
GGTGCTATGG TGGCTTTGTA CCGCCCCGGC CCTATGGAGC AGATACCCCG TTTTATCAAA
TCCAAGCATG GGCTTGAGCC TATCACCTAT CCACACCCCG CACTTGAACC CCTGCTGGAA
GAAACTTACG GGGTTATTGT CTATCAGGAG CAGGTTCTCT TCATAGCCCA GACCTTTTCC
GGCTATACTC TGGGGCAGGC GGATATACTC CGCAAGGCCA TGGGTAAAAA GATTGCCGCC
GTTATGCAGA AGCAGAAAGC CAACTTTGTG GACGGGGCTA TGAAAAACGG CTATACCCGT
GAGATAGCCG ATGAGGTATT TGCTCTGGTT GAACCTTTTG CCGGGTATGC CTTTAACAAG
GCCCATGCTA CCAGCTATGC CCTTATCGCC TATCAGACAG CCTACCTCAA GGCTAATTAC
CCAGTGGAAT ATATAACCGC TTATCTGCAG GCTTTTTGTG ACGTGACCGA AAAGGTGGTA
ACCGCCGTTA CCGAAGCCCG CCATATGGGG ATAGAAGTAT TGCCGCCGGA TATTAACCGC
AGCGGGGCTA ATTTTGAGAT AGAACAAGCT GAAGGCGGGG TTAAAAAAAT CCGCTTCGGG
CTGGCGGCTA TCAAGAATGT GGGTGTGGCG GCGGTAGAAC CTATTGTGGC CGAAAGGAAA
GCCAACGGGG ACTATCTGTC TGTGGAGGAT TTATGCCGCA GGGCCGAGGG TTCATCACTT
AACAAGCGGG TGATGGAAAG TCTGGTTAAG GCCGGGGCTT TGGATAATAT GGGTGACCGG
GGAACGCTCT TTTTTAATTT GCCGAATATA CTTTCGTTGG CTCAGCGGGA GCAGAAGATG
AAAGATTCAA ACCAGACTAC TATGTTTGAC CTTTTCAGCC AGCAATCACC CGTACCCATG
ACTAATCTGG AGCTTGAAGA ATCACCGGTT ACCACCCGTG AAAAACTCCA GTGGGAAAAA
GAGCTGGTAG GTATATTTAT ATCTGAGCAT CCGTTTACCC CCTATGCCAG TTCGGCTTTG
GAGGTAACTA CCGCCCTGTG CGGCCAGATA GATGAGGAAC TCCACAATCA GCTGGTTACA
GTGGCGGGTA TGGTGGCTTC GGTGCGGGTT TCGGCCACCC GCGAAGGCAA ACCGTTTGTT
ATGGCCGAAA TTGAAGATTT GGTAGGACGG GTGGAAATAG CCGCCTGGCC GAAAGTTTAT
AACGCAACCA AGGCCCTCTG GGAAGAGGGG AATATTCTTT TAGTGGAAGG TAAAGCTGTG
GTTCGTGGAG ACAGGGTATC AATTCATGCC GAAAAAGTAA GCCGGTACCA GCCGGAAATA
GAGAAGAAAG CGGCACCGGT ATTTATAAAT GCCCCCCAGC CAAAATCAGA GGAAAAAGAG
CCTCCGGCTC CCCAGCTGCA GCGTTTGGTG GTATGTATCC AGCAAACTGA AAATGAGGAA
CGGGATATTG ACTGCCTGAA CGAGGTGGTG GAAACCCTGC GGCAATATAC GGGTGAAACC
GAAGTACGGT TGTGCGTGGT CAACCACGAG AGGGTTTTCA TATTGAAAAT GCCTGATATC
TGGGTATACT ATTGTCCGGA GCTAAAAAAT AAGCTTGCTG CCCTGGTGGG CAATGCCAAT
GTGAGGTTGG AGAATAATGC CCCAAGCGGA TAA
|
|---|
| Protein sequence | MFCHLHVHTE FSLLDGMCRI SQLVVRAKEL GMEALAITDH GTMHGIPRFY KEAKEAGIKP
ILGSEFYLAY GDRTAKTAAD KNYYHLVLLA KNNKGYHNLI QLSSRSHLEG FYYKPRIDKE
LLEKYSEGLV CLSACPSGEV PRLILENRYD EAREAALWYK KTFENYYIEI QRHPMPDLEK
INSVLIPMAR ELDIPLVATN DTHYLDKEDA PYHDLLLCIG TNALVSDEKR MKMEGEYFYL
KSPQEMAEAY QDIPDAIENT AKIAEMCNVS LDFGRLHLPE IDIPKGKTPD EYLADLCYEG
LPVFYPDAGP EILDRLKYEL DVIKTTEFAN YFLVTWDIIR FVKEKGLYYG VRGSAASSIV
LYCLGITALD PIKYKLVFER FLNIERKEMP DIDMDFQDDR REEVIEYVVG KYGRDHVSQI
ITFGTLGAKA AVRDVGRALG MAYADVDRVA KVIPFSPHMT LDKAMEESSE LKEMYNQDAV
VRNLVDAARK VEGLSRHAST HAAGVVISKD PLTDHVPLQR LSKENNLGLV MTQYTMEDIA
KIGLLKMDFL GLVNLNILGK ACAVIKEYTG QDIDPLAIPL DDQKTFELLA AGETVGVFQL
EGTGMRRYIK ELKPTVFSDI GAMVALYRPG PMEQIPRFIK SKHGLEPITY PHPALEPLLE
ETYGVIVYQE QVLFIAQTFS GYTLGQADIL RKAMGKKIAA VMQKQKANFV DGAMKNGYTR
EIADEVFALV EPFAGYAFNK AHATSYALIA YQTAYLKANY PVEYITAYLQ AFCDVTEKVV
TAVTEARHMG IEVLPPDINR SGANFEIEQA EGGVKKIRFG LAAIKNVGVA AVEPIVAERK
ANGDYLSVED LCRRAEGSSL NKRVMESLVK AGALDNMGDR GTLFFNLPNI LSLAQREQKM
KDSNQTTMFD LFSQQSPVPM TNLELEESPV TTREKLQWEK ELVGIFISEH PFTPYASSAL
EVTTALCGQI DEELHNQLVT VAGMVASVRV SATREGKPFV MAEIEDLVGR VEIAAWPKVY
NATKALWEEG NILLVEGKAV VRGDRVSIHA EKVSRYQPEI EKKAAPVFIN APQPKSEEKE
PPAPQLQRLV VCIQQTENEE RDIDCLNEVV ETLRQYTGET EVRLCVVNHE RVFILKMPDI
WVYYCPELKN KLAALVGNAN VRLENNAPSG
|
|---|
| |