Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_1186 |
Symbol | |
ID | 5132011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | + |
Start bp | 1159924 |
End bp | 1160826 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640530111 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_001214643 |
Protein GI | 147669825 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000204845 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGAACGT TTAAACTGGT AGCCGAAACT GCCGGCGAAA GACTGGATAA ATATATTACC CAAAAGGAAT CAGGGCTTTC CCGCAGTTTT ATTCAGGAAC TGGTGAGTTC AGGTCATATA CTGGTAAACA ACCAGTCTGC CAAACCCAGC CTGAGGCTTA AAACCGGCGA TACAATAACT ATAGAAATCC CTCCCGAAAC CCCCTCTGAA CTTAAAGCCG AAAATATACC GCTGGAAATA ATCTTCCAGG ATAAAGACCT GTTGCTTATA AACAAGCCTC CCGGACTTAC CGTACATCCT GCCCCCGGTC ACCCTGACCA CACACTGGTA AACGGGGTAT TGGCACTGGA ACCTGAAATG GAAGATTTTG ATGACCCTCT TCGCCCCGGA ATAGTCCACC GTCTGGATAA AGATACCTCC GGACTGCTGC TGGTAGCTAA AAACCGTCAG GCACTGGCCA ACCTGTCTGC CCAGTTTAAA GAACGGACCG TACGCAAGTA CTATCTGGCA CTGGTAAAAG GGGAACTAAG GCCTGCCGAA GGGTTTATTG AAGCCCCCTT GGGGCGTGAC CCCCAAAACC GCCAGAAAAT TGCAGTGGTA TCTGACGGGA GGCATGCCCG TACCGGGTAT AAAGTACTGC GGTATATTCA AGGATACAGC CTGCTTGAAG TCAAACTTGA AACCGGCCGT ACTCACCAGA TACGTGTCCA TTTTGCCGCC ATAGGCCACC CGGTGGCAGG TGATGCAGTT TACGGCCAAA AGGAATCCTG GGTAAAACGG CAGTTCCTTC ATGCGCACCG CCTTAGCTTT GCCCTGCCTT CAAACGGGCA GGTAGTGGAG TTCACCTCCC CTCTTCCGCC GGATCTGGAA GAAGCCCTGA AAATACTGGA AACCCCCTCC TGA
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Protein sequence | MRTFKLVAET AGERLDKYIT QKESGLSRSF IQELVSSGHI LVNNQSAKPS LRLKTGDTIT IEIPPETPSE LKAENIPLEI IFQDKDLLLI NKPPGLTVHP APGHPDHTLV NGVLALEPEM EDFDDPLRPG IVHRLDKDTS GLLLVAKNRQ ALANLSAQFK ERTVRKYYLA LVKGELRPAE GFIEAPLGRD PQNRQKIAVV SDGRHARTGY KVLRYIQGYS LLEVKLETGR THQIRVHFAA IGHPVAGDAV YGQKESWVKR QFLHAHRLSF ALPSNGQVVE FTSPLPPDLE EALKILETPS
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