| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1092 |
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| Symbol | |
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| ID | 5131919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 1081517 |
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| End bp | 1084963 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640530017 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001214550 |
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| Protein GI | 147669732 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACCTTA TCGGTTTGTT GTCTCTAATA GACCAAAGTC CTTCATTTAA CAGTCTGTTT
GAATCTTTAG ACAGGGGTGA AGCTGATATT TCTGTTTTAG ATGCGGGGAG GGGTTTCAGT
TTGGCGGCGG TATACCGCAA GCTTAAATGC CCCATGCTGG TTATCACTTC ACAGCCGGAG
CGGGCCAGGG AACTACTGGA ACAGATAGCC GCTTACAGCG GGGAAGAGCC GGGGTTTTTG
CCTGACCCCA GCCTGTTGCC TTACCAGAGG GCTGTTTCAG ACCGTAATTC CTCACTGGAA
AAAATGCGTC TGGCAGGCAT TTTGGGCGGT TTTATCCGGA GTGGAGATGC CCGGATAATA
GTTACAGCTG TGCCGGCTCT GCTTCAGCGG TATATATCCC CCAAAGTATT TGAGCAGTCT
TTTGTGCAGG TCTGGACGGG ATTGGAAACA GAACCCCAGA ATCTTATTTG CCGTTTTCAG
CAACTGGGAT ACCGTCAGGA AAGCATAGTA GAAATGCCGG GAACATATTC ACATCGGGGC
GGGATACTGG ATATCTTCCC CCATACCGAA GATAACCCGG TAAGGCTGGA ATTTTTCGGC
AATACGCTGG AAAGTTTGCG TAATTTTGAC CCTCAAAGCC AGCGTTCGGG AAAGCAAGTA
AACGAGCTTA CCATCAGCCC CGCAAGTGAA ATTTTTCATC TGGGGCAGTT GCCCCGTCAA
GAGCTTAAAA ACAAGCTGGA TGCTTTGCTC ACTGATAACC TTAATCCTGA ATTCAGCCGC
ACTCTGTCGG CAGATATAAA CCACTTGCAG GAGGGTTTAA AACCGGAATA CCCGGAATTT
TTTGCCCCTC TTTTCAATAC CTCAAGCATA CTTGATTATC TGCCGGCGGA TGCTCTGGTA
GTGCTGGATG AGCCTGCCTC TATAGAGCAG GCGGCTTTTC ATCTGGATAA CGAAGCCGAA
GAACTGCGCT CAGATCGTCT GTCACAAGGT GAGCTTCCTT CCGTTTATCC CCGCCCGTAT
TTCAGCTGGG CAGAGATATC TGAAATGTTG AAAACCAAAA AGAGGCTTAT TATGGCCTCT
TTCGGGCGGG AGAGTGAGTC TCTGAAGCTG GAGTTTGCTT CTCCGGATAA TTATGTGGGG
CGTTTAACCA GTTTGTATGA GAAACTGCCG GAACTGAAAG GGCACGCAGG CAGGGTGGTT
ATAGTCAGCC ATCAGGCCGC CCGTTTGACC GAGCTTCTGG CGGAAGAGGG TATTTCCACA
AATGTTCAAA CAGATATTTT GAAACCCCCT CCGTCTGCCA GTCTAAGCCT TGTTCAAGGG
ATATTGGGTG CGGGCTGGAG TTTAAGCGGT AGCTTGCACG TATTTACCGA TGCCGAACTT
TTTGGTTTTG TAAAACAGCG GCGTTTGCCC TCCAAACGTC CGGTTGCCCG CAAGGGAGTG
GTGCTGGACA TAAAGCCGGG TGAATTTGTG GTGCATATAG ACCACGGGGT AGCCCTGTTC
AGCGGGGTCA GCCATATGAA CCGTGACGGC ATGGATAAAG AATACCTGAT ACTCCAGTAT
GCCGGCGGCG ACAAACTCTA TGTACCCACA GACCAGATGG ACAGGGTAAA CCGTTTTATA
GGCAGTGGGG ATGAACCCCC GTCTTTGCAC CGGCTGGGTA CTCAGGAATG GCAAAGGGCT
AAAGAAAAGG CCAGTGAATC CGCGGAAGAG ACTGCCCGTG AGCTCCTTGA GATTTACGCC
AAACGTGAAC TGGCCAGCGG CTATGCTTTT TCGGCAGACA CCGTCTGGCA ACAGGAGATG
GAAGCATCGT TCTCCTATGT GGAAACACCT GACCAGCTGA AGGCCCTGTA CGATGTCAAA
GAAGACATGG AAAAACCCCG CCCTATGGAC AGGCTTATAC TGGGGGACGT GGGCTACGGT
AAAACCGAGG TAGCTATAAG GGCGGCTTTC AAAGCGGTTA TGGACGGCAA ACAGGTAGCA
GTTTTAGTGC CTACTACTGT GCTTGCCCAG CAGCATTACA CTACTTTTCG TGAACGGCTG
GCCACTTTTC CGGTAAAAGT AGAGGTGCTA AGCCGCTTCC GCAGCCAGTC CGAACAGAAA
GAAGTAGTTG AAAATCTGGA AAAAGGCGAG GTGGATATCT GCATAGGTAC TCACCGCCTG
CTTCAGGCAG ATATAAAGTT TAAAGACTTG GGATTAGTAG TTATAGATGA AGAGCAACGC
TTCGGGGTAG CCCACAAGGA ATTTTTCAAG AAACTGCGTG CCCAGGTAGA TGTGCTTACC
CTTAGCGCTA CCCCCATACC CCGTACTTTG CACATGTCTA TGGTGGGAGT GCGGGATATG
AGTATTATCG AAACTCCGCC CGGTGAACGC CTGCCTATAA AGACCGTAGT AGCCGCTTTT
GATGAACGGC TGATACGTGA AGCTATACTG CGGGAAATGG AAAGAAACGG GCAGGTATTT
TTTGTGAATA ACCGGGTGAT GGGCATAAAT TTGCTGGCAG AACGTATCCA GCAGCTTGTT
CCCGAAGCCC GCATAGGTAT CGGGCACGGG CAGATGGCTG AAGAAAAACT GGCGGCCGTA
ATGGCTGATT TTGTGCGGCA TGAACTGGAT GTGCTGGTAT GTACCACCAT AATAGAATCC
GGGGTGGATG TGCCGAATGC CAATACCCTT ATCATAAACC GGGCAGACCG CTTCGGGCTT
ACCCAGCTTT ACCAGTTGCG GGGAAGGGTG GGGCGGAGTT CCCAGCTGGC ATATGCCTAT
TTCCTGTATG AAAAAGAAAA ACGCCTTAGC GGCGATGCTG AGAAACGCCT GAAAACTATC
TATGAGGCAG CTGAACTGGG GGCAGGCTAC GGCATTGCTA TGAAAGACTT GGAGATACGG
GGTGCGGGAA CACTGCTTGG GGTAAAACAG TCAGGGTATA TAAATTCAGT CGGTTTCAAT
CTGTATACCC AGATGCTGTC AGAGGCTGTG GCCGGGCTGA AAGCTACGGG CAGCGGGCTT
TCAAAAGAGG AAATACGCCT CAAGAACATG CCTGCCCCCA AGCTGGATTT ACCTCTGGAT
GCATTTATAC CCGAATATTA TATTCAGGAT CTGGATCTCA GGCTTTCCAT CTACCAGCAG
TTATCGGCTT TAACCAGTCT GGCAGGAGTT CAGGAAAAAG AAAAGGAACT GGCAGACCGG
TTCGGGGCAA TGCCGCCGGA ACTTGAAAAC CTGCTTTATT CAATCCGTCT GCGTCTGCTG
GCTAAAAAAG CCCACGTGGA TACTATAGTA ACCGAAGGCA GCCAGATAGT GGTGCGGATG
CTGGGCGGGC TGATAATAAA CAAGTCTTTG CTTGAACCGC TTCGGGCAGG GGTTATCGCA
GGGCGTAATC AGGTGGCTAT AGAGTTTAAA AAAATTGGTG ATAAATGGAA AGAGGTACTG
GAAGAGGTAA TCTGGCGATT GGGGTAG
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| Protein sequence | MNLIGLLSLI DQSPSFNSLF ESLDRGEADI SVLDAGRGFS LAAVYRKLKC PMLVITSQPE
RARELLEQIA AYSGEEPGFL PDPSLLPYQR AVSDRNSSLE KMRLAGILGG FIRSGDARII
VTAVPALLQR YISPKVFEQS FVQVWTGLET EPQNLICRFQ QLGYRQESIV EMPGTYSHRG
GILDIFPHTE DNPVRLEFFG NTLESLRNFD PQSQRSGKQV NELTISPASE IFHLGQLPRQ
ELKNKLDALL TDNLNPEFSR TLSADINHLQ EGLKPEYPEF FAPLFNTSSI LDYLPADALV
VLDEPASIEQ AAFHLDNEAE ELRSDRLSQG ELPSVYPRPY FSWAEISEML KTKKRLIMAS
FGRESESLKL EFASPDNYVG RLTSLYEKLP ELKGHAGRVV IVSHQAARLT ELLAEEGIST
NVQTDILKPP PSASLSLVQG ILGAGWSLSG SLHVFTDAEL FGFVKQRRLP SKRPVARKGV
VLDIKPGEFV VHIDHGVALF SGVSHMNRDG MDKEYLILQY AGGDKLYVPT DQMDRVNRFI
GSGDEPPSLH RLGTQEWQRA KEKASESAEE TARELLEIYA KRELASGYAF SADTVWQQEM
EASFSYVETP DQLKALYDVK EDMEKPRPMD RLILGDVGYG KTEVAIRAAF KAVMDGKQVA
VLVPTTVLAQ QHYTTFRERL ATFPVKVEVL SRFRSQSEQK EVVENLEKGE VDICIGTHRL
LQADIKFKDL GLVVIDEEQR FGVAHKEFFK KLRAQVDVLT LSATPIPRTL HMSMVGVRDM
SIIETPPGER LPIKTVVAAF DERLIREAIL REMERNGQVF FVNNRVMGIN LLAERIQQLV
PEARIGIGHG QMAEEKLAAV MADFVRHELD VLVCTTIIES GVDVPNANTL IINRADRFGL
TQLYQLRGRV GRSSQLAYAY FLYEKEKRLS GDAEKRLKTI YEAAELGAGY GIAMKDLEIR
GAGTLLGVKQ SGYINSVGFN LYTQMLSEAV AGLKATGSGL SKEEIRLKNM PAPKLDLPLD
AFIPEYYIQD LDLRLSIYQQ LSALTSLAGV QEKEKELADR FGAMPPELEN LLYSIRLRLL
AKKAHVDTIV TEGSQIVVRM LGGLIINKSL LEPLRAGVIA GRNQVAIEFK KIGDKWKEVL
EEVIWRLG
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