Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0687 |
Symbol | def |
ID | 5132326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 679279 |
End bp | 679782 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640529597 |
Product | peptide deformylase |
Protein accession | YP_001214149 |
Protein GI | 147669331 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.132535 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTATCC GCCGCATCTG TGAGTTGCCT GAGCCAGTTT TAAGGAAAAA GGCCAAAAAA GTGCCTTCTA TTGACGGTTC TATCCAAACT CTCATTGATG ACATGATTGA AACTATGAAT AGCGCTGACG GAGCGGGGTT AGCCGCCCCT CAAGTAGGCG TATCTTTAAG GTTAGTGGTT TTCCGTGAAC CAGATACCAA AGAAGCCACC GTGCTTATCA ACCCGGAGAT TATCAAAAAA GAAGGTCAGA GACAGGTTAC CGAAGGTTGT CTCTCCATTC CGGGTTATTT TGGTGAACTT ACCAGAGCCG AAACAGTAAC TGCCAAAGGT CTTGACCGAC ATGGCAAGGC CTGCCGTATA AAAGGAACCG GTATTGTAGC CCAGCTGCTG GAACATGAAA CCGAACATCT GGACGGTATC CTTTATATAG ACCACCTTGA GAGTGAAGAC CAATTGCACG AGATAGGGCC GGATGATGAA ATGCCCGAAG AAATCCGTGA ATAG
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Protein sequence | MAIRRICELP EPVLRKKAKK VPSIDGSIQT LIDDMIETMN SADGAGLAAP QVGVSLRLVV FREPDTKEAT VLINPEIIKK EGQRQVTEGC LSIPGYFGEL TRAETVTAKG LDRHGKACRI KGTGIVAQLL EHETEHLDGI LYIDHLESED QLHEIGPDDE MPEEIRE
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