| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0652 |
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| Symbol | |
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| ID | 5131112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 640956 |
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| End bp | 643067 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640529555 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001214115 |
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| Protein GI | 147669297 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.957627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAA AACTTGTTAT AGTTGAGTCA CCTGCCAAAG CCCGTACTAT CAGCAAAATG
CTGGGTAAGG ACTTTAATAT TATGGCCACC ATGGGGCATA TACGGGATTT GCCTAAAAGT
ACGCTGGGCG TAGATGTTGA AAACAATTTT ACCCCCAAAT ATGTTTCCCT GAAGGCTAAG
GCCAAGGTTA TAAAGGAACT TAAGGAAGCA GTCAAGCATT CCAAGGCAAT ATATCTGGCT
ACCGACCCTG ACCGCGAAGG TGAGGCCATT GCCTGGCATA TATCCGAAGT CACCAAAGCA
AATCTATCCA ACCCTAAACG GGTGGTGTTT CACGAAATTA CCAAAGAAGC CATAGACAAG
GCTTTCAAAA ATACCCGTGA ACTGGATATG GATCTGGTAA ATGCCCAGCA AGCCCGCCGG
GTGCTTGACC GGCTGGTGGG TTACAAACTA AGCCCCCTGC TCTGGCGAAA GGTTCAAAGG
GGACTTTCAG CCGGACGGGT ACAATCTGTC TCCCTGAAAA TAATAGTTGA CCGTGAACGG
GAAATAGAGA AGTTTGTATC TACTGAATAC TGGAACATAG AGGCCTTGCT GAGTAAAAAA
GTAAAATCAG CCGCCTTCAA AGCCACTCTG GCCGGTTATG TAACCAAAGG CAAACTGGAA
ATACATAACG AATCTGAAGC TGACCAAATC AAAAAAGAGC TTGAGGTATC TGACTATCAG
GTACTAAAAA TAAAAAGAAA ATCAAACCTC AGGCAATCTC CTGCTCCCTT TATTACCAGC
ACTCTCCAGC AGGAAGCCTG GCGGAAACTC CGTTTTTCAG CCAAGCAAAC CATGGTCATA
GCCCAGCAAC TGTATGAAGG CCTGAACGTA GAGGGTGAAG GAGAAGTGGG TCTTATCACC
TATATGCGTA CTGACTCTAC CAATGTAGCC CGAACTGCTG TAGCCGAAAC CCGTGATTAT
ATAACTGAAA AATACGGCCC TGCCTACCTG CCCAAACAGG CCAGAGTATT CTCAAGCAAG
GTTAAGGGAG CACAGGAAGC CCATGAAGCT ATCCGCCCTA CCCGCATAAA CCGCACACCT
GATTTTATCA AGAAGAGTTT GTCGGCAGAC CAGTTCAAGC TTTACCAGCT TATCTGGCAG
CGCATGATGG CCAGCCAGAT GAGCCCTGCC GTCTTTGACA ATACAACTAT AGATATAGAG
GCCAAGCACC AGCCATCAAA AACCCGCTAT CTGCTTAGGA CTACCAGCTC GGTAAATACT
TTCCCGGGTT TTACTATTGT GTATATAGAG GGCAAGGACG AGGACGAGGA AAAAGAACAA
TCCAGCCTGC CCCCCATGGA AGAAGGCGAA GAACTGAAGC TGAAAAGTCT GGATGCTACC
CAGCACTTTA CCCAACCGCC TCCCCGTTAT ACCGAAGCTA CACTAATCAA GGCGCTGGAA
CAGAACGGCA TCGGACGCCC CAGCACTTAT GCTCCCACTA TTTCCACCAT ACAGGAACGG
GAATATATTA CCAAGCTTAA AGGCAGCCTG AAGCCCAGTG AACTGGGGAT GCTGGTAAAT
GACCTGCTTG TAGAGCATTT CCCTGATATT ATCGGCATAG ATTTTACCGC CGCCATGGAA
GCCGAACTGG ATAAAATAGC TACCGAAAAA CTGGATTGGG TGCCCATTAT ACGGCGTTTC
TACGAACCAT TTATAAAAGA AATAGAAGCC GCCAGTGAAA AAATTGAGAA AATTAAGCCA
CCTGAAGAAG AACTGGACGA ACTTTGCCCT GAATGTAATG CCAAACTGGT CATCAAACGG
GGACGCTTCG GCAAATTTAT TGCCTGCTCA CGTTATTCCA AGGAAGATGA CGGCTGCCGT
TACACCCGCT CATACCAGAT AAAAACAGGT GCCAAATGCC CCGACTGCAA TTCGGATATA
GTTGAGAAAT ACAGCAAAAA GGGCAAGATA TTTTACGGCT GTGCCGGTTA CCCGAACTGC
AAATTTGTAT CTTTCTACAA GCCCTTGACC AAACCTTGCC CGGAATGCGG CGCGCTTATG
ACCAAGAGCG GCCAGAACTG GGCAAAATGC ACCAAGTGCG GTAAACGCAA AAAACTTGAA
GATGAAAGCT AA
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| Protein sequence | MKEKLVIVES PAKARTISKM LGKDFNIMAT MGHIRDLPKS TLGVDVENNF TPKYVSLKAK
AKVIKELKEA VKHSKAIYLA TDPDREGEAI AWHISEVTKA NLSNPKRVVF HEITKEAIDK
AFKNTRELDM DLVNAQQARR VLDRLVGYKL SPLLWRKVQR GLSAGRVQSV SLKIIVDRER
EIEKFVSTEY WNIEALLSKK VKSAAFKATL AGYVTKGKLE IHNESEADQI KKELEVSDYQ
VLKIKRKSNL RQSPAPFITS TLQQEAWRKL RFSAKQTMVI AQQLYEGLNV EGEGEVGLIT
YMRTDSTNVA RTAVAETRDY ITEKYGPAYL PKQARVFSSK VKGAQEAHEA IRPTRINRTP
DFIKKSLSAD QFKLYQLIWQ RMMASQMSPA VFDNTTIDIE AKHQPSKTRY LLRTTSSVNT
FPGFTIVYIE GKDEDEEKEQ SSLPPMEEGE ELKLKSLDAT QHFTQPPPRY TEATLIKALE
QNGIGRPSTY APTISTIQER EYITKLKGSL KPSELGMLVN DLLVEHFPDI IGIDFTAAME
AELDKIATEK LDWVPIIRRF YEPFIKEIEA ASEKIEKIKP PEEELDELCP ECNAKLVIKR
GRFGKFIACS RYSKEDDGCR YTRSYQIKTG AKCPDCNSDI VEKYSKKGKI FYGCAGYPNC
KFVSFYKPLT KPCPECGALM TKSGQNWAKC TKCGKRKKLE DES
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