| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0604 |
|---|
| Symbol | |
|---|
| ID | 5131270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 594286 |
|---|
| End bp | 595158 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640529507 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_001214067 |
|---|
| Protein GI | 147669249 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA GGACATTATT TTTGAGTTTG ATTCTAGGGG TTACACTTCT GAGCAGTTTA
CTGCTGGCAG GCTGTCAGGA AGAAACACCC TCTACTGCTA AACTGAAAAT TGCAGTCAGT
ATAGTGCCAC TAAAGGAGTT TACTCAGCAA ATTGCAGGGG ATAAGGCTGA GGTAGTTCTT
ATGGTTCCTC CCGGAGCAGA GCCGCATACT TATCAGCCGC TTCCTTCGCA GATGGTAGAT
GTAAGCCAGG CAGATATGTA TGTGAAACTG GGATCTGATT TTGGTTTTGA GCAAAACTGG
CTTTCAAAAA TATTGTCATT AAACCATTCT ATGCTGGTTG TAGACAGTTC GGTAAACATT
ACACTTGAGA GTGGTTCGGA AGGTGATGGA GCAGACCCGC ATATTTGGCT TTCCCCGCGT
AATGCTATCC AAATGGTTAA AAATATTACT TTGGGGCTGA TGAGTCTGGA TCCCGAAAAC
CAAAGTTATT ATGCCGCCAA CAGAGATGCT TATCTGGCAA AGCTGGAGCA GCTGGATAAC
GAAATAACAT TGGCCTTCAG TAATCTTTAT AACCGCACTT TTCTGGTCTT TCACCCTGCT
TGGGTTTACT TCGCCAGAGA CTATAATCTG AAGGAACTTT CTATTGAGAT AGAGGGCAAA
GAGCCCACCC CCCAACAAAT GATAGAAATT ATAAATATGG CAATACAAAA TAATATCAGC
ATTGTTTTTG CTTCGCCCCA ATTTTCCAGC CGAAGTGCGG AGGCTATTGC TTCTGAAATA
GACGGCAGGG TAGTGATGAT AGACCCACTG GCAGAAGATT ACATAACGAA TATGGAGTTT
GTTTACAAAC AAATGCAAGA GGTTATGAGC TGA
|
|---|
| Protein sequence | MKFRTLFLSL ILGVTLLSSL LLAGCQEETP STAKLKIAVS IVPLKEFTQQ IAGDKAEVVL
MVPPGAEPHT YQPLPSQMVD VSQADMYVKL GSDFGFEQNW LSKILSLNHS MLVVDSSVNI
TLESGSEGDG ADPHIWLSPR NAIQMVKNIT LGLMSLDPEN QSYYAANRDA YLAKLEQLDN
EITLAFSNLY NRTFLVFHPA WVYFARDYNL KELSIEIEGK EPTPQQMIEI INMAIQNNIS
IVFASPQFSS RSAEAIASEI DGRVVMIDPL AEDYITNMEF VYKQMQEVMS
|
|---|
| |