| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0569 |
|---|
| Symbol | |
|---|
| ID | 5131489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 552895 |
|---|
| End bp | 553383 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640529472 |
|---|
| Product | Rossmann fold nucleotide-binding protein-like protein |
|---|
| Protein accession | YP_001214032 |
|---|
| Protein GI | 147669214 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
|---|
| TIGRFAM ID | [TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00359855 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCTTCCA TGAAGAATAA ACATATATTT GTTGCCGTAA TTGGTGCTTC AAAGGCCAAC
TCTGAAGAAG CCCGCTTGGC CGAAGAAGTA GGCAAAGAGC TTGCTCTAAG GCAAGTTACA
CTTGTCTGCG GGGGTATGGG CGGGGTAATG GAAGCCGCCT GCCGCGGGGC TTCCTTGAAC
GGAGGGCTGA CCATAGGCAT ACTGCCGGGA AACAGCCGTG AAGAGGCTAA TCCTTACGTC
CAAATCCCCA TTGTAAGCAG TATAGGTTTT GCCAGAAATA TCATGGTGGT CAAATCTGCC
CAGGCAGTTA TTGCCATTGG CGGGGCTTAT GGCACCTTAT CCGAGATAGC TTATGCCCTT
CAAATCGAGC TGCCGGTAAT AGCTTTAAAC AGCTGGTCAA TGAGTCAGAA CGGCAAATCT
GACAGCGCTG TAATAAAGGC CGAAAATGCC CTTGAAGCGG TTACCAAGGC TCTGGATTTA
ATAAACTAA
|
|---|
| Protein sequence | MPSMKNKHIF VAVIGASKAN SEEARLAEEV GKELALRQVT LVCGGMGGVM EAACRGASLN
GGLTIGILPG NSREEANPYV QIPIVSSIGF ARNIMVVKSA QAVIAIGGAY GTLSEIAYAL
QIELPVIALN SWSMSQNGKS DSAVIKAENA LEAVTKALDL IN
|
|---|
| |