| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0526 |
|---|
| Symbol | |
|---|
| ID | 5131164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 514001 |
|---|
| End bp | 515563 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640529428 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001213989 |
|---|
| Protein GI | 147669171 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000172392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTG AGAAAGATAA GAAAGAGTTT AGCCCTGACG ATATTGATGA CGACAAGGAT
GCGGAACAAG GGCTGGCAAA TATCCATGAT GAACAGGATG CCGAAGCTGA AGGCGACAAA
CTGGCAGAGC CTGACCTCAA GGATATAGCT GATACAGACA TACCCGCCGA GCTCACCGAA
GAAGAACTGG CAGCCGAAGC AGACCTGATA CCGGATACCG ATGAAGAAAT CAGCCCGCTG
AATATTGATC TTGACATACC CCTTGAACAG ATAGACACCC AGGGTATAGT AGATGATCCG
GTACGTATGT ATCTGCATGA AATAGGCCGG GTACCCCTTC TTTCGGCCGA AGATGAAAAA
ACTCTGGCCA AGAAAATGGA AGAAGGCAAA CGCATTCGCG AAATCCGCCA GGAGTGTCTG
GAAAAACGCG GGCGTTACCC GTCTGCCGCC GAATCTTTCC TGTGCATGCT CAGGGAGCTT
GCCCAAGCTA CCGAAGTCCT GTTCCAACTG GGACAGGAAT TGGGGATGGA TACTTCCGCC
AGTTTGAAAA CCATTATCCA CAACCCCAAA CTAAGGACAG CTATTGACCA CGAGATTGAC
CAGCAACTCA CCAAAAATAT CTCGGATAAT ACCGGCAAGA GTATGGCGGA GATAGAACAG
TCTTTTATCA ATCTGGCTAT AAACAGCTCC CTCCTGCCCA AGGTTGTGCT GGATGCCATA
CCCGAAAAAA TGACTATACC CGAAATATCA GATCACACTT ACGATACTAC CTTTATAAAT
CATCTGGAAC GGCATGAAGC AAGCCTGAAG TATTATCTGG ATAACCTTGA AATAGACGCT
AAACGGGCTG AACGCCATCT TATTCAGGCC AACCTCCGCC TGGTGGTCAG TGTGGCCAAG
AAACACATTG GCAGGGGCAT GCCTCTGCTT GACCTTATAC AGGAAGGTAA TATCGGTCTT
ATCCGTGCAG TGGAAAAGTT TGACTTCCAC CGCGGTTTCA AGTTTTCCAC TTATGCAACA
TGGTGGATAC GCCAGGCCAT TACCCGGGCT ATTGCAGACC AAGCCAGAAC TATACGCATA
CCTGTTCATA TGGTAGAAAC CATTAACAAG CTGCTTTCAA TAAGCCGCCA GCTGTCCCAA
AAGCTTGGGC GTGAACCTAC CCCGGACGAA ATAGCCCTTG AGATGGACCT ACCGCCGGAA
AAAGTACGAG AAATTGCCAA GGTATCCCAG TTGCCGGTTT CACTGGAATC CCCCATCGGC
GAAGAAGAAG ATAGCCATCT GGGAGACTTT ATTGAAGACC AGAACGCACT GGCACCGCCG
GATGCCGCTT CACGCCAGTT GCTAAAGGAG CAAATAGATA CTGTTCTGGG CAGCCTGACC
CCGCGTGAAC GCCGGGTACT GCAGCTCCGC TTCGGACTGG AAGATGGCCG AAGCCGCACT
CTGGAAGAAG TGGGTAAAGA GTTTAACGTA ACCCGTGAAC GTATCCGCCA GATAGAGGCC
AAGGCTCTGC GGAAACTCCG CCACCCCAGC CGCAGCCGCA AACTTAAGGA TTATCTGGAA
TAA
|
|---|
| Protein sequence | MPAEKDKKEF SPDDIDDDKD AEQGLANIHD EQDAEAEGDK LAEPDLKDIA DTDIPAELTE
EELAAEADLI PDTDEEISPL NIDLDIPLEQ IDTQGIVDDP VRMYLHEIGR VPLLSAEDEK
TLAKKMEEGK RIREIRQECL EKRGRYPSAA ESFLCMLREL AQATEVLFQL GQELGMDTSA
SLKTIIHNPK LRTAIDHEID QQLTKNISDN TGKSMAEIEQ SFINLAINSS LLPKVVLDAI
PEKMTIPEIS DHTYDTTFIN HLERHEASLK YYLDNLEIDA KRAERHLIQA NLRLVVSVAK
KHIGRGMPLL DLIQEGNIGL IRAVEKFDFH RGFKFSTYAT WWIRQAITRA IADQARTIRI
PVHMVETINK LLSISRQLSQ KLGREPTPDE IALEMDLPPE KVREIAKVSQ LPVSLESPIG
EEEDSHLGDF IEDQNALAPP DAASRQLLKE QIDTVLGSLT PRERRVLQLR FGLEDGRSRT
LEEVGKEFNV TRERIRQIEA KALRKLRHPS RSRKLKDYLE
|
|---|
| |