Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0457 |
Symbol | rpsC |
ID | 5131032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | + |
Start bp | 456648 |
End bp | 457484 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640529359 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_001213920 |
Protein GI | 147669102 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000991742 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACGCA AAGTTCATCC AATCGGGTTT AGACTTGGCA TTATTAAAGA CTGGAGTGCT AAATGGCACG CCAGTGATAA AAACTTTGCC GAATGCCTTA CTGAAGATCT TAAGCTTCGC AAGGCTATCT CAAAGAAGTA TGTAGATGCC GCTATCTCTC AGGTAGATAT TGAGCGCCAG TCCAACAAAG TGACGGTTTC CGTCCGGACT GCACGTCCGG GTATTGTAAT CGGACGCGGC GGTCAGCGTG TTGATGAAAT GCGCCATTTC CTGGAAGATT TAATTGGCAA AAAGGTTCAG TTGAATATTG TAGAAATATC TCAGGCTGAG CTTGACGCCT TTCTGGTTGC CCGGAGTGTG GCAGAGCAGA TTGAACGCCG TGTTGCTTAC AGGCGTGCCA TGAAGCAAGC CATTTTCCGC AGCATGCAGG CTGGTGCCAA GGGTATTAAA ATATGTGCCT CAGGTCGTCT GGGCGGCGTA GAAATTGCCC GGCGCGAGGT AATGCACGAG GGGCGTGTTC CTTTGCACAC CCTGAGAGCT GACATTGATT ACGGATGCAC CAGGGCTCAC ACTGCCCTTG GTGATGTAGG TATAAAGGTA TGGGTATACC GTGGTGATAT CCTGCCCGAA GCTAAAGAGA AATCTGAATC CGCAGTAACG GAAATGGCTG CTGTTATGGC TGATGCTCCT GCCGCAGTTG TTACCGAAAC CAAGGTTGCT GATATTGCGG CCAAACCCAA GAGGGTTGTT AAGAAGGCCG AAGCTGAGAT TCCCGCTGAA GAAAAACCCA AGCGTGTAGT CAAAAAAGCT GAGAACATAA CCAAGGAAGA GGAATAA
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Protein sequence | MGRKVHPIGF RLGIIKDWSA KWHASDKNFA ECLTEDLKLR KAISKKYVDA AISQVDIERQ SNKVTVSVRT ARPGIVIGRG GQRVDEMRHF LEDLIGKKVQ LNIVEISQAE LDAFLVARSV AEQIERRVAY RRAMKQAIFR SMQAGAKGIK ICASGRLGGV EIARREVMHE GRVPLHTLRA DIDYGCTRAH TALGDVGIKV WVYRGDILPE AKEKSESAVT EMAAVMADAP AAVVTETKVA DIAAKPKRVV KKAEAEIPAE EKPKRVVKKA ENITKEEE
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