Gene DehaBAV1_0451 details

Gene Information

• Locus tag: DehaBAV1_0451
• Symbol: rplC
• ID: 5131225
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. BAV1
• Kingdom: Bacteria
• Replicon accession: NC_009455
• Strand: +
• Start bp: 453592
• End bp: 454209
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640529353
• Product: 50S ribosomal protein L3
• Protein accession: YP_001213914
• Protein GI: 147669096
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000154888
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCAAG GTATTATCGG TAAAAAAATC GGTATGACCC AGATATTCCA AGAGGACGGC 
AAGGCTCAGC CGGTCACCTT GGTGGAGGCT GGTCCGTGTG TAGTGGTCCA GGTCAAGACC 
GAAAAGCAGG ACGGCTATGA GGCTGTTCAG CTGGGTTACG GCAAGGCTAA GCATATCACT 
TCGGCTGTAA AGGGCCAGTG CAGAGGCTTT GGTGAATTCA AAGTGCTGCG CGAAGTAGAT 
GTTGATGATA TTGCGGCGGT CAGTGTCGGT GACCAGATTA CGGTCAGTGA CTTTAAGGAC 
GGCGAAAAGA TAGACGCCAG TGGCGTCTCC AGAGGGCGTG GTTTCTCAGG CGTTGTAAAA 
CGCTGGCATT TTGCCGGTGG TCCCAAAACC CATGGTCAAT CTGACCGTCA TAGGGCTCCG 
GGTTCCATCG GTTCCACCAC CACCCCCGGC CGTATTTATA AGGGCAAGCA CATGGCGGGT 
CACATGGGGA ACGAGGCGGT TACTATCCGC AATCTGGTTG TGCTTAAAAC CGACGCAGAG 
AAAAATCTGC TGATGGTCAA GGGCGCTATC CCCGGTGGCA AGAATACTAT AATATTAATT 
AAGAAAACGG GTAAATAA 

 

Protein sequence

MIQGIIGKKI GMTQIFQEDG KAQPVTLVEA GPCVVVQVKT EKQDGYEAVQ LGYGKAKHIT 
SAVKGQCRGF GEFKVLREVD VDDIAAVSVG DQITVSDFKD GEKIDASGVS RGRGFSGVVK 
RWHFAGGPKT HGQSDRHRAP GSIGSTTTPG RIYKGKHMAG HMGNEAVTIR NLVVLKTDAE 
KNLLMVKGAI PGGKNTIILI KKTGK