| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0351 |
|---|
| Symbol | ispG |
|---|
| ID | 5131479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 359374 |
|---|
| End bp | 360420 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640529251 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001213814 |
|---|
| Protein GI | 147668996 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.661187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTACGC GGCGACAAAG TACCGAAATC CGACTGGGGA ATCTGACTAT CGGGGGCAGT
GCCCCGATAT CAGTCCAGTC CATGACTAAA ACAGATACCC GCAATATCCC GGCTACCATC
GCCCAGATAA AAGAGCTGGA AGAATGCGGT TGTGAGATAA TCCGCCTGGC TATACCGGAT
ATGGAAGCCG CCTCTGCCCT GAAATCTATC CGCCCGAAAG TCAAAATACC CATAGTGGCA
GATATCCACT TTGATTACCG TCTGGCACTG GCCTCACTTT CGGCCGGAGT AGACGGCCTC
AGGCTCAATC CCGGCAATAT CGGTGACCCG GAGCGGGTTA AAGCGGTGGT CAAATCCGCT
AAAGAAAGGG AAATACCAAT ACGCATTGGG GTAAACGCCG GCAGCCTGCC CAAAGACCTG
CCCCCAGAGC TCACCATTGC CCAAAAGATG GTCAAGGCCG CCATGGGACA TATAAAGATA
CTGGAAGGCC TGGATTTCGG TCTGATTAAG GTTTCACTGA AGGCATTTGA TGTACCCACC
ACTATTGAGG CCTACACACA GATAGCCTCT CTCATACCCT ACCCTTTGCA TGTGGGCATT
ACCGAAACGG GTACGCCTAA AACGGGTCTG GTGCGGAGTG CGGTGGGAAT AGGCAACCTG
CTTTACATGG GCATTGGGGA TACTATCCGT GTTTCCCTGA CTGCCCCACC TCACGAAGAA
GTATTTGCCG CTTATGAAAT ACTAAAGAGC CTGAACCTCA GGCAGCGCGG CCCGATACTG
GTCAGTTGCC CCACCTGCTC CCGAACCGAG GTGGATATTG TGGGTATTGC CTCACAGGTA
CAGGAGGCTT TAAACAAAAT AGACAAGCCT ATCAGGGTAG CGGTAATGGG CTGTGCCGTA
AACGGCCCCG GCGAAGCCAA AGAGGCTGAT TTGGGCATAG CCTGCGGCAA AGGACAGGGA
CTGCTCTTCC GCAAGGGCGA AAAAATTGCC GTAGTCCCCG AAGATGAGCT GGTAGATGCC
CTGTTACGGG AGATAGCCTC CCTGTAG
|
|---|
| Protein sequence | MITRRQSTEI RLGNLTIGGS APISVQSMTK TDTRNIPATI AQIKELEECG CEIIRLAIPD
MEAASALKSI RPKVKIPIVA DIHFDYRLAL ASLSAGVDGL RLNPGNIGDP ERVKAVVKSA
KEREIPIRIG VNAGSLPKDL PPELTIAQKM VKAAMGHIKI LEGLDFGLIK VSLKAFDVPT
TIEAYTQIAS LIPYPLHVGI TETGTPKTGL VRSAVGIGNL LYMGIGDTIR VSLTAPPHEE
VFAAYEILKS LNLRQRGPIL VSCPTCSRTE VDIVGIASQV QEALNKIDKP IRVAVMGCAV
NGPGEAKEAD LGIACGKGQG LLFRKGEKIA VVPEDELVDA LLREIASL
|
|---|
| |