| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0313 |
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| Symbol | secD |
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| ID | 5131470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 320825 |
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| End bp | 322174 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640529213 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001213777 |
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| Protein GI | 147668959 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000119854 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGGA AAAACGGGCT CGTGTTTTTG GCCATACTGG CCGCCATGAT CCTTGCTTTC
ACGATAGTGC TGCCGACGGA CAAAGGCACA CTTCTGGGCA AGGGAATCCT GTTTGGTCTG
GACTTAAAGG GAGGCCTGCA CATGGTATAC CAGGCTGACT TGTCCAACGT AGACGAAAGT
GATATTGACG GAGTAATGGA CGGCGTGGTT GAGGTTATAT CCAACCGCAT TAACCCATTG
GGTGTAACCG AAGCGTTAAT CCAGCGTCAG GGAGATGACC GAATAGTAGT CGAACTGCCG
GGTCTGGATA TTACAGACGA ACAAAAAGCC CGTATCGGCC GTACCGCCCT GCTGGAGTTT
GGCGAACTGG CGGCTGACGG AGAAGACTAT AAATGGGAAA ACAGTCTGGG CAAATGGAAA
CCGGTCACCG CTACTATTGA CGGGGTTGAA TATGCCCTGA CCAGTGCCTA TTTTAAAGAC
AGCACTTATG TCAACCGTGA CCAGTACGGA AATATCCTGC TGGTGTTTGA ATGGGACGCC
ACCGGTGCTA AATTATCCAA GGAAATAACC ACCCGCCTTT TAAACCAGCA GCTGGGTATT
TTTGAAGGTG ACGAAGCTCT TTCCGGTGAT GACGGAGTAC CCATCGCCCC CGTCATAAAT
AATGTTATTG AAACCAGCGG CGTTATAGAA GGCCTCAGCT ACAACGAAGC AGATATGCTT
TCCAACCAGC TGAATGCCGG CCGCCTACCG GTACCTCTGG AGTCTATATA CGAGCAAACC
GTTTCACCCA CTCTGGGTCA AAATTTTGTA GATCTGGCCG TAAAAGCCGG TCTAGTAGGC
ATAATTCTGG TTATGATATT TATGATAGCT TTTTACCGCC TTCCCGGCCT GCTGTCCAGC
ATAGCTTTAG TGTTCTACGG GGTCATCGTA ATGGCTCTGT TCAAGCTGGT GCCTGTTACC
CTTACACTGG CGGGTATAGG CGGTTTTATT GTATCGGCGG GTATGGCGGT AGACGCCAAT
ATCCTTATAT TTGCCCGTTT GAAAGAGGAA CTTCTTTCAG GCAAAACTCT GGGAGCAGCA
GTCGAAGCCG GGTTTTCACG TGCATGGTCT GCCATCTGGG ACTCAAACGT TACCACTTTT
ATAGCCTGCG GCATTCTGTT CTGGGTGGGT GGCACTATTG CGGCCGGTGC ACCGGTTAAG
GGCTTTGCCG TAACATTGTT TTTGGGCGTA GCCGTCAGCA TGTTCACCGC CATTTTTGTT
ACCCGCACTC TGCTCAGGCT TTTTGTAGGC ACAAAAACAG GCAAAAAGCT AGCCCTATTC
ACCACCCAGA CAAGAGGCAA AAATGAATAA
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| Protein sequence | MRRKNGLVFL AILAAMILAF TIVLPTDKGT LLGKGILFGL DLKGGLHMVY QADLSNVDES
DIDGVMDGVV EVISNRINPL GVTEALIQRQ GDDRIVVELP GLDITDEQKA RIGRTALLEF
GELAADGEDY KWENSLGKWK PVTATIDGVE YALTSAYFKD STYVNRDQYG NILLVFEWDA
TGAKLSKEIT TRLLNQQLGI FEGDEALSGD DGVPIAPVIN NVIETSGVIE GLSYNEADML
SNQLNAGRLP VPLESIYEQT VSPTLGQNFV DLAVKAGLVG IILVMIFMIA FYRLPGLLSS
IALVFYGVIV MALFKLVPVT LTLAGIGGFI VSAGMAVDAN ILIFARLKEE LLSGKTLGAA
VEAGFSRAWS AIWDSNVTTF IACGILFWVG GTIAAGAPVK GFAVTLFLGV AVSMFTAIFV
TRTLLRLFVG TKTGKKLALF TTQTRGKNE
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