| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0005 |
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| Symbol | |
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| ID | 5131613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 6001 |
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| End bp | 8187 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640528906 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001213475 |
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| Protein GI | 147668657 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTCG CCGATCTTAA AGAAAAGGCC TCCAAATACC TCCCCCCGGA AAAACTGACG
CTTCTGGAGG AGGCATATAA CTATGCCGCC GCAGCTCATG CCGGCCAGAT GCGAAAATCC
GGCGAACCAT TTATTGAACA CCCCTTAAAC GTGGCCATGA CTTTGGCTGA CCTCCAGCTG
GACGCTGCCA CACTTTCGGC TGCCCTGCTC CATGACGTAC CCGAAGATGC CAATATCAGC
CTGGAGCAGA TAGACAAAAA ATTCGGGGCA GATGTGGCCA AACTGGTAGA CGGGGTAACC
AAACTAAGCA AACTGGCACT TGGTCCGGCC ATAGAAGATG CCCGACGCCC CGGCGGCAAT
GCCAGCCTCC GTCAAGCCGA AAACCTGCGT AAAATGCTGG TGGCCATGGC CGAGGATTTG
CGGGTAGTTT TTATAAAGCT GGCAGACCGC TTTCACAATA TGCGCACCCT TCAGGCACTC
TCACCCGAAA AACGCCGCAG TATAGCCAAG GAAACCATGG AGATATATGC CCCGCTGGCC
CACCGTCTGG GTATCTGGGA ACTGAAATGG CAACTGGAAG ACCTGGCCTT CCGTTACCTT
GACCCCCGCC ATTACCGGCA GGTAGCCAAT CTGGTAGATT CAAAACTTGC CCAACGCCAG
AATTATCTTG AACACGTAAG TGCCATTCTG CAAGGTGAAT TTGAAAAAAA CGGACTGAAC
GTTGAAGTCT CCGGCCGCCC CAAACACCTT TACAGCATTT ATCAGAAAAT GGAAAAGTAT
GCCTCGCAGG GCAAACAATT TGAAGATATT TATGACGTAC TCGCCCTAAG GGTGCTGGTA
AATGACATAC CGGACTGTTA CCATGCGGTA GGCATTGTCC ACAGTCTGTG GCACCCCATA
CCGGGTGCTT TTGATGATTA TATCGCCAAC CCCAAACCAA ACGGCTACCA GTCCCTCCAC
ACCGCCGTTA TGAGCTTGGG CACTACCCCG CTTGAGGTTC AGGTACGCAC CTACCAGATG
CACCATATTG CCGAATACGG CGTAGCCGCC CACTGGCGTT ATAAAACCGC CGGTAAAGAA
GACGTAAACT TTGAAGACCG CATAGGCTGG TTAAGACAGC TTATAGAGTG GCACCGGGAT
ATGCGCGGTG CCGAAGAATT TCTGGAATCC GTCAAGACCG ATATTTTCAA TGACCAGGTC
TTTGTCTTTA CCCCCAAAGG AGAAATAAAG GATTTGGCCA AGGGGGCTAC CCCCATAGAT
TTCGCTTACC GCATTCATAC CGAACTGGGC AACCGCTGTA TAGGTGCAAA AGCTAACGGC
AGGCTGGTAC CGCTGGATTA CCAGCTAAAA AACGGCGAGG TGGTAGAAAT AGTCACCACC
AAGAAAGACC GCGGGCCCAG CCGTGACTGG CTGAATGGCA ATATGGGTTA TATCAAAACC
CATCACGCCC GCGAAAAGAT ACTGGCCTGG TTCAAGAAGC AGGAACGAAC CGAAAATCTG
GACCGCGGAC GGGAACTGCT TGAAAAAGAG CTTAAGCATA TCGGCATCAA AACAGTTGAC
CGTGATGCTT TGGCCAAAAC CTTTAAATAT GAAAACGCAG ATGAATTTCT GATGGCAATA
GGTTACGGGG CAGTTTCAGT TCATCAGGTA TCCATGAAAC TCCTCAGCCA GCAGGAACAG
CCGCGGGTGG TCACTCCCCC CACTCAAACC ACCAAACCTA CCTCCCAGAG CAGTGTTTCG
GTGATGGGCA CCGGTTCTCT TTTAACCAAT ATTGCCAAGT GCTGCAACCC TGTACCCGGG
GACGATATAA TAGGTTATGT CACTCGCAAC CGGGGCGTTA CGGTACACCG CCAAGACTGC
CACAATATTC TGCACGAGGA AGAAAGGGAG AGACTGGTGA GCGTAGACTG GGGTATGCCA
AAAGAAGAAC TTTACCCGGC ATCTATCCGC ATTCAGGCAT GGGACAGGGT GGGTCTGGTA
CGGGATGTTT CCACCGTGGT AGCTGAAGAA AAAATCAGTA TCCTCTCCAT GACCGTAACC
GAAAATGACG ATAAAACCAC CACACTGGCC ATGACTACCC AGATAAAAAG CCTTTCCCAG
CTGACCAGAT TGATGGCCAA ACTTGAAGGT ATACGCGGAA TAATAAGCAT AAACCGGGTG
GGCGCGGACG GCTCAAGATC CGGCTAA
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| Protein sequence | MEFADLKEKA SKYLPPEKLT LLEEAYNYAA AAHAGQMRKS GEPFIEHPLN VAMTLADLQL
DAATLSAALL HDVPEDANIS LEQIDKKFGA DVAKLVDGVT KLSKLALGPA IEDARRPGGN
ASLRQAENLR KMLVAMAEDL RVVFIKLADR FHNMRTLQAL SPEKRRSIAK ETMEIYAPLA
HRLGIWELKW QLEDLAFRYL DPRHYRQVAN LVDSKLAQRQ NYLEHVSAIL QGEFEKNGLN
VEVSGRPKHL YSIYQKMEKY ASQGKQFEDI YDVLALRVLV NDIPDCYHAV GIVHSLWHPI
PGAFDDYIAN PKPNGYQSLH TAVMSLGTTP LEVQVRTYQM HHIAEYGVAA HWRYKTAGKE
DVNFEDRIGW LRQLIEWHRD MRGAEEFLES VKTDIFNDQV FVFTPKGEIK DLAKGATPID
FAYRIHTELG NRCIGAKANG RLVPLDYQLK NGEVVEIVTT KKDRGPSRDW LNGNMGYIKT
HHAREKILAW FKKQERTENL DRGRELLEKE LKHIGIKTVD RDALAKTFKY ENADEFLMAI
GYGAVSVHQV SMKLLSQQEQ PRVVTPPTQT TKPTSQSSVS VMGTGSLLTN IAKCCNPVPG
DDIIGYVTRN RGVTVHRQDC HNILHEEERE RLVSVDWGMP KEELYPASIR IQAWDRVGLV
RDVSTVVAEE KISILSMTVT ENDDKTTTLA MTTQIKSLSQ LTRLMAKLEG IRGIISINRV
GADGSRSG
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