| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3331 |
|---|
| Symbol | |
|---|
| ID | 5092938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3979539 |
|---|
| End bp | 3981839 |
|---|
| Gene Length | 2301 bp |
|---|
| Protein Length | 766 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644742758 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001195666 |
|---|
| Protein GI | 146301075 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.153274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TATTCTCTTT TTTACTTTTA ATAAGCGGTA CACATTTCAT CCAGGCACAA
AATAACAATA ACAAAGTTAA AGACAGTATT GCAAAAGATT CTCTGGAAAT GCAAACCAAA
CGAAATGAAT TGCAGACCGT TGAAATTGTA GGCCGTTCGA CCAAGAAATA CAACAGCGAT
TATTCGTTTG CAGCAACTAA AATTGCCGCT TTAAACAAAG ATATTCCGCA GTCTATTTCT
ACAATTACCA AAGAATTAAT TGCTGACAAA GGTGCTTTTT ATCTGGCCGA TGCAGTAAAA
ATGTCGAGCG GTGTAATTCC GGCTAGTTAT TATAATCAAT ATACAATTCG CGGTATCAGC
CAGAATGAAG AAGGCCAGAT AATTAACGGA ATGCGAACAC GCCAGTATTA TTTTTTACAG
CCTTTAACTA GTAATATTGA ACGTGTTGAA GTGATAAAAG GTCCCTCGAG TGCCACATTT
TCTTCTGTTG ATCCGGGCGG AAGTATCAAT ATGGTGACCA AAAAACCTTT GGCAATAGAC
CGAAAAGAAA TCAGCATGAG CGTGGGGAGT TTCAGCACTT TGCGCGGAAC ACTTGATTTT
ACCGGACCTT TAAACGAATC AAAAACACTT TTATATCGTG TAAACGGTGC CTATCAGCAG
GCAAAATCAT TTCGGGATTT AGTTAATAAT AAATCGTTTT TGATCTCGCC TTCTTTCAGT
TATATCCCAA ATGAAAAAAC GGCCATTAAC ACCGAGTTAA TTTTAAGTGA CATGACGGGA
ATTCTGGATC GCGGACAGCC TATTTTTGGT GCTGTCGCCG GAAAAACAAG TTTAAATAAA
ACACCAATAA GTTTAAATCT GGGCGCTCCA AGTGATTTTT TTAAATCGAA GGAAATGATC
CTGATGACCA ATTTTGCGCA TAAATTCAAT TCTAAAATTG GTTTTAATGC GTCGTATATG
AAACAAACCT GGACAGAAGA TCTTCAGGAA CACCGAACTA CAAATGCTTT TGCGGTTGAC
ATGAACAATC AGCCGGTTAC GAGTCTGGCT ATGATGCAGT TTGTACAGCG TCAGCAAAAC
TGGGATATCG ACAATTTGAG TGCATATTTA AACTTCGATT TAAAAACCGG AAAACTCCAT
CATAAATTAC TGACAGGTTA TGATTTAAGC AGCTGGAACA AAAATAAAGG CGGCGGACAA
AACGCGGCGC GAGGTTATCT GTTGAAAGAC GGAACTGTTG CGAGCAGTTT TGTTTTAGCA
AATGCATCAA ATTATCAAAC CGTAACCGTT GACGGCGTTG TAATGCCAAA ACCAAATGTT
GATTATTTTA ATTTGAATAA TCCAATTTAC AGACTGACCA GTCCTGAAGA TTATACACTG
AATGTGAGAA CAGCGCTTCC ATCAGCATTA ACTACTACAA ATGCCATTTA TATTCAGGAT
CAGATTCAAT GGGAAAAGTT TACTTTTTTA TTGGGACTTC GAAACGAATG GTTTGAAGAT
ATTACGAACT ATGAAACCAA CAACGAACTG AAAGTCAAAA AATCGGCTTT ACTGCCAAGA
ATTGGAATTA CGTATGCCGT AAACAGTGCC ATAAATGTGT ACACAACGTA TCTAGAAGGT
TATCAGCCTC AATCGAATAC CGTTACTTTA ATGCCTCAAA CAGCAAGTTT ACCGGGCGGC
AGTTTATTTG ACCCGCTGGA AAGTGATTTA AAAGAAGTAG GAATCAAAAC TACTTTTTTA
AACAACTCGA TGAGTTTTAA TGCGGCAATT TACGAAATCA GACAGCGCAA CATTTTAATG
AATGCTAATG ATCCCGTAAA TCCTGATTTA CTGGTAACGA GAGGCGGTGA ACGAAGCCGT
GGTTTTGAAT GTGATTTAGC AGGTTATATC ACACCAGACT GGCAGATTAA TGCCTCGTAC
AGTTATATTG ATGCCGAAAT TACAAAAGAT AATAATCCCG CCCTAATTGG TGCCAGAAAG
CAAAACACGC CAAAAAACAG TGCCAATTTA TGGACGCGTT ACAATTTTGC ATCCGATTCT
GATTTACAAG ATTTTGGAAT TGGAATTGGA ATGCAGTATC AAAGCACTAA AGTACCTTGG
TTTACAAGAG ATTTTACACT TCCAGATTTT ACCATTTTTG ATGCTGCTTT GTTTTACAAA
CCAAATAAAA GCAATGTGCA GATTGCTGTA AATGCGGGAA ATTTATTAAA CAAAACGTAT
TGGCTGGGCG CTCAGAATTA TCTGCGTTTA TTTCCGGGAA GTCCGCGAAA CGTTACGCTT
ACGGTAACTT ATAAATTTTA A
|
|---|
| Protein sequence | MKNIFSFLLL ISGTHFIQAQ NNNNKVKDSI AKDSLEMQTK RNELQTVEIV GRSTKKYNSD
YSFAATKIAA LNKDIPQSIS TITKELIADK GAFYLADAVK MSSGVIPASY YNQYTIRGIS
QNEEGQIING MRTRQYYFLQ PLTSNIERVE VIKGPSSATF SSVDPGGSIN MVTKKPLAID
RKEISMSVGS FSTLRGTLDF TGPLNESKTL LYRVNGAYQQ AKSFRDLVNN KSFLISPSFS
YIPNEKTAIN TELILSDMTG ILDRGQPIFG AVAGKTSLNK TPISLNLGAP SDFFKSKEMI
LMTNFAHKFN SKIGFNASYM KQTWTEDLQE HRTTNAFAVD MNNQPVTSLA MMQFVQRQQN
WDIDNLSAYL NFDLKTGKLH HKLLTGYDLS SWNKNKGGGQ NAARGYLLKD GTVASSFVLA
NASNYQTVTV DGVVMPKPNV DYFNLNNPIY RLTSPEDYTL NVRTALPSAL TTTNAIYIQD
QIQWEKFTFL LGLRNEWFED ITNYETNNEL KVKKSALLPR IGITYAVNSA INVYTTYLEG
YQPQSNTVTL MPQTASLPGG SLFDPLESDL KEVGIKTTFL NNSMSFNAAI YEIRQRNILM
NANDPVNPDL LVTRGGERSR GFECDLAGYI TPDWQINASY SYIDAEITKD NNPALIGARK
QNTPKNSANL WTRYNFASDS DLQDFGIGIG MQYQSTKVPW FTRDFTLPDF TIFDAALFYK
PNKSNVQIAV NAGNLLNKTY WLGAQNYLRL FPGSPRNVTL TVTYKF
|
|---|
| |