| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1943 |
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| Symbol | rpoB |
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| ID | 5091679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | + |
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| Start bp | 2243449 |
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| End bp | 2247261 |
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| Gene Length | 3813 bp |
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| Protein Length | 1270 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644741364 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001194294 |
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| Protein GI | 146299703 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.205302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAACAA ATCAGACTGA AAGATTGAAT TTTGCCTCTA CAAAAAATAT CCCTGACTAT
CCAGATTTCT TAGATGTTCA GGTTAAATCT TTTAAAGATT TCTTTCAATT AGAAACGAAA
TCTGACGAAA GAGGCAACGA AGGGTTATAC AACACCTTCA TGGAAAACTT CCCAATTACA
GATACAAGAA ACAACTTTGT ATTGGAATTC CTAGATTATT TTGTTGATCC GCCACGTTAT
ACAATTCAAG AATGTATAGA GAGAGGTCTT ACTTATAGTG TGCCTTTAAA AGCTAGGTTA
AAACTATACT GTACAGATCC AGAACACGAA GATTTTGAAA CAATTGTACA AGATGTTTAT
CTTGGAACAA TTCCTTACAT GACTCCTAGT GGTACTTTTG TTATTAATGG TGCCGAGTGT
GTTGTAGTAT CTCAATTACA CCGTTCTCCA GGGGTTTTCT TTGGACAGTC ATTCCACGCA
AATGGAACTA AACTTTATTC TGCGAGAGTA ATTCCTTTTA AAGGATCTTG GATAGAATTT
TCTACAGATA TCAACAGCGT AATGTACGCG TATATCGATA GAAAGAAAAA ATTACCTGTT
ACAACTTTAT TCCGTGCTAT TGGTTTCGAA AGAGATAAGG ATATCCTTGA AATTTTCGAC
TTAGCAGAAG AAATTAAAGT TTCTAAAACA GGTATTAAGA AATATATTGG AAGAAGACTT
GCCGCGCGTG TTTTGAACAC ATGGCACGAG GATTTCGTAG ATGAGGATAC TGGAGAGGTA
GTTTCTATCG AGCGTAACGA AATCATCCTT GACCGTGATA CAATTATCGA CAAAGATAAT
GTTGAAGAGA TCATCGATTC TAACGTAAAA TCTATTTTGT TGCACAAGGA GGATAATAAC
CAAGCAGATT ATGCTATTAT CCACAATACG TTACAAAAAG ATCCAACAAA CTCTGAAAAA
GAAGCTGTAG AGCACATTTA CCGTCAGTTG CGTAACGCTG AACCGCCTGA TGAGGAAACT
GCTCGTGGTA TTATAGATAA ATTGTTCTTC TCTGATCAAC GTTATAACTT AGGTGAAGTT
GGTCGTTACA GAATGAACAA AAAATTAGAT TTAGATATCC CTATGGATAA GCAAGTGCTT
ACTAAAGAGG ATATCATTAC AATCGTTAAA TATTTGATCG AGTTGATCAA CTCTAAAGCA
GAGATTGATG ATATTGATCA CTTATCAAAC CGTCGTGTTA GAACAGTTGG TGAACAATTG
TCTCAACAAT TCGGTGTTGG TTTAGCACGT ATGGCTAGAA CTATTCGTGA GAGAATGAAC
GTTAGAGATA ACGAGGTGTT TACACCAATT GATTTGATTA ATGCTAAAAC ATTATCATCA
GTTATCAACT CTTTCTTTGG TACTAACCAG TTATCTCAAT TTATGGATCA AACGAATCCA
TTAGCTGAGA TTACACACAA AAGAAGACTT TCTGCACTTG GACCAGGTGG ACTTTCGAGA
GAGAGAGCTG GTTTCGAGGT TCGTGACGTT CACTATACTC ACTATGGTCG ATTATGTCCG
ATTGAAACTC CTGAGGGACC AAACATTGGT TTGATTTCAT CTCTTGGTGT TTACGCAAAA
GTAAACGGAA TGGGATTCAT TGAAACTCCA TACCGTAAAG TTACAGATGG TGTTGTTGAT
TTAGAAAGCG CACCAATCTA TTTAAGTGCT GAAGAAGAAG AAGGTAAAAT GATTGCTCAG
GCAAACATTG AAATGGATGC TTCTGGTAAA ATTACAGCTA GTAATGTTAT TGCTCGTGAA
GAGGGTGACT TCCCAGTTGT TGAACCAAGT TCAGTACATT ATACAGACGT TGCTCCTAAC
CAGATCGCTT CGATTTCTGC ATCTTTGATT CCTTTCTTGG AGCATGATGA TGCGAACCGT
GCGTTGATGG GATCGAACAT GATGCGTCAG GCAGTTCCTT TGATCCGTCC TGAAGCACCG
ATTGTTGGTA CAGGTTTAGA GCGTCAGGTA GCTTCAGATT CAAGAGTATT AATCAATGCT
GAAGGGCATG GTACTGTTGA ATACGTAGAT GCTAATATCA TTACTATTAA ATACGATCGT
ACAGAAGACG AGAGAATGGT TAGTTTTGAT GCTGATGAGA AAACGTACAA CTTAATTAAA
TTTAGAAAAA CCAATCAAGG TACAAGTATC AACTTGAAGC CTATCGTAAG AAGAGGTGAT
AGAGTTGTTC CTGGACAAGT ATTATCTGAA GGATATGCTA CTCAAAATGG AGAATTAGCT
TTAGGTAGAA ACTTAAAAGT TGCGTTCATG CCATGGAAAG GGTACAACTT CGAGGATGCG
ATTGTAATTT CTGAGAAAGT AGTTCGCGAT GATATTTTTA CATCTATCCA CGTTGATGAT
TATTCATTAG AGGTTAGAGA TACTAAGTTA GGTAACGAAG AGTTAACAAA CGATATTCCT
AACGTTTCTG AAGAAGCTAC TAAAGATTTA GATGAAAACG GTATGATCAG AATTGGAGCA
GAGGTTAAAC CTGGCGACAT TTTGATTGGT AAAATTACGC CAAAAGGAGA ATCAGATCCT
ACTCCAGAGG AGAAATTGCT TCGTGCAATC TTCGGAGATA AAGCGGGTGA TGTAAAAGAT
GCTTCATTAA AAGCTTCTCC ATCTTTACAC GGTGTAGTTC TTGACAAAAA ATTATTTGCA
AGAGCCGTAA AAGATAAACG TAAACGTACT CAAGATAAAG ATGCTTTAGG CGCTTTAGAA
ATGGAATTCG AAACTAAATT TGTTGAATTA AAAGACAGAT TAGTTGAGAA ATTATTCTTG
ATCGTTAACG GAAAAACATC TCAAGGTGTA ATGAATGATT TGGGTGAAGA AGTTTTACCA
AAAGGTAAAA AATATACTCA AAAAATGCTT TACGCAGTAG AAGATTTTGC TCACTTAAGC
AAAGGTCAAT GGGTTGCTGA TGACGCTACT AATAAAATGG TTAATGATTT AATTCATAAC
TATAAAATTA AGCTGAACGA CTTACAAGGA GCTTTAAGAA GAGAGAAATT CACTATTACG
GTTGGAGATG AATTACCATC TGGAATCTTG AAGTTGGCTA AAATCTATAT CGCTAAAAAA
CGTAAGTTAA AAGTTGGTGA TAAAATGGCA GGACGTCACG GTAACAAAGG TATTGTTGCT
AGAATCGTTC GTCACGAAGA TATGCCTTTC TTAGAAGATG GAACACCAGT AGATATTGTA
TTGAATCCAC TTGGGGTACC TTCACGTATG AACATTGGTC AGATTTATGA GACTGTTCTT
GGATGGGCTG GTATGAACTT GGGTAGAAAA TTTGCTACTC CAATTTTCGA CGGTGCTTCT
CTTGACGAGA TCAACGCTTT GACTGATGAG GCTAACGTAC CACGTTTCGG GCATACATAT
CTTTATGATG GTGGAACTGG AGAGCGTTTT GCACAAAAAG CAACTGTTGG TGTAATTTAC
ATGCTTAAAT TAGGACACAT GGTTGATGAT AAGATGCACG CACGTTCTAT CGGACCATAT
TCATTGATTA CGCAACAGCC ACTTGGAGGT AAGGCTCAAT TTGGAGGTCA GCGTTTTGGA
GAGATGGAGG TTTGGGCACT TGAGGCTTAT GGAGCTTCTA GTACTTTACG TGAAATCTTA
ACTGTTAAGT CTGATGACGT TATTGGTAGA GCTAAAACTT ACGAAGCTAT CGTTAAGGGT
GAAACTATGC CAGAACCAGG TTTACCAGAA TCATTCAATG TATTAATGCA CGAATTGAAA
GGTCTAGGTT TAGATCTTCG TTTGGAAGAA TAA
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| Protein sequence | MITNQTERLN FASTKNIPDY PDFLDVQVKS FKDFFQLETK SDERGNEGLY NTFMENFPIT
DTRNNFVLEF LDYFVDPPRY TIQECIERGL TYSVPLKARL KLYCTDPEHE DFETIVQDVY
LGTIPYMTPS GTFVINGAEC VVVSQLHRSP GVFFGQSFHA NGTKLYSARV IPFKGSWIEF
STDINSVMYA YIDRKKKLPV TTLFRAIGFE RDKDILEIFD LAEEIKVSKT GIKKYIGRRL
AARVLNTWHE DFVDEDTGEV VSIERNEIIL DRDTIIDKDN VEEIIDSNVK SILLHKEDNN
QADYAIIHNT LQKDPTNSEK EAVEHIYRQL RNAEPPDEET ARGIIDKLFF SDQRYNLGEV
GRYRMNKKLD LDIPMDKQVL TKEDIITIVK YLIELINSKA EIDDIDHLSN RRVRTVGEQL
SQQFGVGLAR MARTIRERMN VRDNEVFTPI DLINAKTLSS VINSFFGTNQ LSQFMDQTNP
LAEITHKRRL SALGPGGLSR ERAGFEVRDV HYTHYGRLCP IETPEGPNIG LISSLGVYAK
VNGMGFIETP YRKVTDGVVD LESAPIYLSA EEEEGKMIAQ ANIEMDASGK ITASNVIARE
EGDFPVVEPS SVHYTDVAPN QIASISASLI PFLEHDDANR ALMGSNMMRQ AVPLIRPEAP
IVGTGLERQV ASDSRVLINA EGHGTVEYVD ANIITIKYDR TEDERMVSFD ADEKTYNLIK
FRKTNQGTSI NLKPIVRRGD RVVPGQVLSE GYATQNGELA LGRNLKVAFM PWKGYNFEDA
IVISEKVVRD DIFTSIHVDD YSLEVRDTKL GNEELTNDIP NVSEEATKDL DENGMIRIGA
EVKPGDILIG KITPKGESDP TPEEKLLRAI FGDKAGDVKD ASLKASPSLH GVVLDKKLFA
RAVKDKRKRT QDKDALGALE MEFETKFVEL KDRLVEKLFL IVNGKTSQGV MNDLGEEVLP
KGKKYTQKML YAVEDFAHLS KGQWVADDAT NKMVNDLIHN YKIKLNDLQG ALRREKFTIT
VGDELPSGIL KLAKIYIAKK RKLKVGDKMA GRHGNKGIVA RIVRHEDMPF LEDGTPVDIV
LNPLGVPSRM NIGQIYETVL GWAGMNLGRK FATPIFDGAS LDEINALTDE ANVPRFGHTY
LYDGGTGERF AQKATVGVIY MLKLGHMVDD KMHARSIGPY SLITQQPLGG KAQFGGQRFG
EMEVWALEAY GASSTLREIL TVKSDDVIGR AKTYEAIVKG ETMPEPGLPE SFNVLMHELK
GLGLDLRLEE
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