| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1330 |
|---|
| Symbol | |
|---|
| ID | 5092335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 1521903 |
|---|
| End bp | 1522610 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644740733 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001193681 |
|---|
| Protein GI | 146299090 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR03608] putative bacteriocin export ABC transporter, lactococcin 972 group |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.514657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACGA TACAAAATTT AACCAAAGTA TTTAGAACCG AAGAAGTTGA AACTGCTGCG
CTAAGTGGAA TTAACTTAGA GATTAAAAAA GGGGATTTCC TAACTATTAT GGGACCTTCT
GGATGCGGTA AATCGACTTT ATTGAATATT ATCGGTCTTT TGGACGGTGC AGACGGCGGA
AGTTACAAAT TGCTGGATCA GGAAATGATT GGTTTAAAGG AAAAAGGAAG GGCTCAGGTT
CGCAAGGAAA ATATCGGATT CATTTTTCAG AATTTTAATC TAATCGATGA GCTTTCTGTT
TATGACAATA TCGAACTGCC TTTGCTTTAT AACAACGTAA AAGCTTCTGA AAGAAAACAA
AAAATTGAAG CTATTGCAGA AAAGCTAAAT ATATCACATC GATTAAAACA TTTTCCGCAG
CAGCTTTCAG GAGGTCAGCA GCAAAGAGTT GCCGTTGCCA GAGCTTTGGT TAATGATCCT
AAAATTATTC TTGCCGATGA ACCAACAGGA AATCTGGACA GTAAAAATGG TAATGAAGTA
ATGGAACTTC TAACAGATCT GCACGCAAAA GGTGCTACAA TTTTGATGGT TACCCACTCT
GATTATGATG CTTCTTTTTC ACAAAAAACA ATTCATATGA AAGACGGTGT TATTTTTTCT
GAAAAGCTAA ATCAGCGAAA TGTTGATGTT TTTATGGACG CTAAATAA
|
|---|
| Protein sequence | MITIQNLTKV FRTEEVETAA LSGINLEIKK GDFLTIMGPS GCGKSTLLNI IGLLDGADGG
SYKLLDQEMI GLKEKGRAQV RKENIGFIFQ NFNLIDELSV YDNIELPLLY NNVKASERKQ
KIEAIAEKLN ISHRLKHFPQ QLSGGQQQRV AVARALVNDP KIILADEPTG NLDSKNGNEV
MELLTDLHAK GATILMVTHS DYDASFSQKT IHMKDGVIFS EKLNQRNVDV FMDAK
|
|---|
| |