Gene Fjoh_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_0236 
Symbol 
ID5091291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp247015 
End bp247833 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content34% 
IMG OID644739629 
Productpseudouridine synthase 
Protein accessionYP_001192592 
Protein GI146298001 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAAA ATTTAAAACG TCTGAATAAA TTTATAGGTG AAACGGGTTA TTGTTCTCGT 
CGTGAAGCCG ATAAATTAAT TGAAGAAGGA CGCGTAACAA TAAATGGTGC AGCTGCTGAA
ATGGGAACTA AAGTTTCATC AGATGATGAA ATACGCATTG ACGGTAAATT AATCGTTGAA
AAACACGAAA AATTGGTTTA TCTGGCTTTT AATAAACCAG TAGGAATTGA ATGTACCACT
AACTTAGAGG TTAAAAATAA TATTGTCGAT TATATTAATT ATCCTAAACG TATTTTCCCA
ATTGGAAGGC TGGATAAAGC GAGTGAAGGA TTAATTTTTA TGACTAATGA CGGTGATATC
GTAAACAAGA TTTTGCGTGC CAGAAACAAT CACGAAAAAG AATATACGGT TACAGTTAAC
AAACCTATTA CAGAACGTTT TATTCAGCGT ATGGGTAATG GAGTTCCTAT TTTAGATACT
GTCACAAAAA AATGTAAAGT AGAGCAAATC AGCAAATACA CTTTCAAGAT TATTTTAACG
CAGGGATTAA ACCGTCAGAT TAGAAGAATG TCTGAGTATC TGGGTTATGA AGTTACTGCC
TTAAAACGTA TTAGAATCAT TAATATCTCG CTGGATGTTC CGGTTGGGCG CTACCGTGAT
TTAACTGATG CTGAAATTAA AGAATTAAAT AAATTAATAG AGCCTTCGAG TAAAACTGAA
GAAGCGAGTC TTCCAAAGGC TGCAGCTCCA ACTCCAAGTC GAAGATCAAC GTTTATTTCT
AAAAATGATC CTAGATTTAG AAAAAGAGGC AACAATTAA
 
Protein sequence
MEENLKRLNK FIGETGYCSR READKLIEEG RVTINGAAAE MGTKVSSDDE IRIDGKLIVE 
KHEKLVYLAF NKPVGIECTT NLEVKNNIVD YINYPKRIFP IGRLDKASEG LIFMTNDGDI
VNKILRARNN HEKEYTVTVN KPITERFIQR MGNGVPILDT VTKKCKVEQI SKYTFKIILT
QGLNRQIRRM SEYLGYEVTA LKRIRIINIS LDVPVGRYRD LTDAEIKELN KLIEPSSKTE
EASLPKAAAP TPSRRSTFIS KNDPRFRKRG NN