| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0209 |
|---|
| Symbol | |
|---|
| ID | 5094537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 220424 |
|---|
| End bp | 221287 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644739602 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001192565 |
|---|
| Protein GI | 146297974 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCC TTGACGATTT AAAACTTCAA TATAAATTAG GCGGTATCGC TTTGCGTGTT
ATTTATTGGA ATATCGCTTG TTTTCTCATC TCTTTAGTTT TTTTCTATCA ATTTTCTAAC
GGAAGTTTTG CTTTTCCAAA CTGGCTGGCT CTGTCTTCAG ATCCTCAGGT TTTTATGTTT
AAACCGTGGA CGTTTTTAAC GTATGCATTT TTTCATTTCG GATTTATGCA TTTGCTGTTT
AATATGCTGG TTTTAAACTT TGCCAGTAAT TTGTTCCTGA CTTTTTTCTC GCAGAAACAA
TATTTAGGAT TGTACATTTT AGGAGCCATT TTTTCGGGAA TTGTATTTGC TTTGAGTTTT
TATGTTTTAG GAACTTCTGC ATCAATAGTC GGGGCGTCAG CTGCTATAAT GGCAATTTTA
GTTGCGGCAA CGACTTATCA GCCTTTAATG AATGTTCGAT TGTTTTTGTT TGGCAATGTA
AAGCTTTGGC ATATTACAGG TGTAATTTTA GTTTTAGATC TAATGCAGTT TCGTTTGGAT
AATATGGGAG GTCATATTTC TCATTTAGCC GGTGCATTTT TCGGATTTAT ATTTATTAAA
CTGCTTCAAA ACGGAACAGA TTTAAGTACT GTAATTACCA GAATATTAGA TTTTTTTGCT
AATCTTTTTA GAAAATCACC AACGACTCCA TTTAAAACAG TTCATAAGAA TTATAAAAAG
CCTACTGAGA AAACAACATC AAAAATTGTC ACAAAAGACA AAACACAGCA GCAAATCGAT
GAGATTTTGG ATAAGATCAG TCAGTCTGGT TATGACTGCC TGACAAAAGA AGAAAAAGAG
TTTTTGTTTA AAGCTGGAAA ATAA
|
|---|
| Protein sequence | MNILDDLKLQ YKLGGIALRV IYWNIACFLI SLVFFYQFSN GSFAFPNWLA LSSDPQVFMF
KPWTFLTYAF FHFGFMHLLF NMLVLNFASN LFLTFFSQKQ YLGLYILGAI FSGIVFALSF
YVLGTSASIV GASAAIMAIL VAATTYQPLM NVRLFLFGNV KLWHITGVIL VLDLMQFRLD
NMGGHISHLA GAFFGFIFIK LLQNGTDLST VITRILDFFA NLFRKSPTTP FKTVHKNYKK
PTEKTTSKIV TKDKTQQQID EILDKISQSG YDCLTKEEKE FLFKAGK
|
|---|
| |