Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2279 |
Symbol | |
ID | 5104231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 2178924 |
End bp | 2179454 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640508176 |
Product | transcription factor IIE (TFIIE), alpha subunit |
Protein accession | YP_001192341 |
Protein GI | 146305025 |
COG category | [K] Transcription |
COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.933385 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGGCA ACATTGATCA ACTCATGAAA GATATGGCTA GGGATCTCCT GGGAGAGGAC GTAATAGATG TGCTCTCTTT CCTTCTTGAT AATAAGACAG AGCTAACTGA CGAGGAGATG GCCAACAAAC TCAACGTCAA GGTTAACGAG GTCAGGAAGA AGTTATATGC CCTTGCTGAA CACGGGCTGG TGAGCTACCG GAGAACCAGG GATAAGGAGA CTGGTTGGTA TGTATATTAC TGGAAGGCCA ATGTGGATCA GATAAATGAA CTTCTCCTCT CACGTAAGAG GGAGATCCTG AACAAACTTA AGGCTAGATT GGAGTACGAA ACTAACAACG AGTTCTATAT TTGTCCCGAG GATAAGACCA AGTACACCTT TGAGGAGGCC TTTGAGAATG AGTTCAAATG TCCCAAATGC GGTGTTCAAC TGGTCTATTA CGATTCCGCC AAAATGCGGG AATTCCTAGA ACGTAAAATA AAGGAAATAG AAGAGGAGAT CGCCAGGGAG ACAAAGGTTG GGAGCTCCTA A
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Protein sequence | MTGNIDQLMK DMARDLLGED VIDVLSFLLD NKTELTDEEM ANKLNVKVNE VRKKLYALAE HGLVSYRRTR DKETGWYVYY WKANVDQINE LLLSRKREIL NKLKARLEYE TNNEFYICPE DKTKYTFEEA FENEFKCPKC GVQLVYYDSA KMREFLERKI KEIEEEIARE TKVGSS
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