| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2189 |
|---|
| Symbol | |
|---|
| ID | 5105410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2100279 |
|---|
| End bp | 2101697 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640508083 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001192252 |
|---|
| Protein GI | 146304936 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000970823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000755051 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAAG CTCTAACTAT CCTATTAGTT ATATTGATAC TTCCGAGCCT ACTTTCAGGA
CTAAGCAATA TCGTGGCATT TGCTCAAAGT GGAAGCGGTA GTAATAATTT AGGGACCTTT
ATCTCGACAC TACAAACATT GATACCTGCA GCACTGCTAT TGCTTGCAAT TTTGGCAAAC
AGATACGATC AACGTTATGC TTTAGTGTTG TTCGCAGCTG CTTTAGCTTC AGCGTTATTT
CTAGCAGCTG CTACGGGAGG AAAACTAGGA GGAAGCGTAA ACATAACATT AGTAGAACTG
AAAGTAACAG TTTCTGGTCC CACTTCGGCT TATACTGGAA ACGCTGAAAC TTATACAGTG
TCCTGGAGCC CATCTATGTC TGGAACAGTG ATATGGACAG TATTATATAA TGGGAGCATA
GTATACAATT CCACAGGCGG AACTTCGTTC ACCTATACAT TCAATGAACC TGGAAAATAC
ATAATTGCTG CGGCTGTAAT TAATGATCAA AACTATGCAG GAGGGTCTGG AGCAGTCTTA
ATAACTGTAA CGAACCCACC TAGCCCCTTG GGCTGGCTTA CTGGGGCTAT AACGAGCGCA
ATCTCTGGAT TTATTAACAC TGCAGCTAAC ACATTTGAAG GATTTTTGAC TACACTTTTA
CAGATTTTCG GAGCACCTCT AGAATGGATG ACTTATTCCC CTACGCCCAA TATTTCTCCA
ATTACTCAAA CGATATATAA TGAAATCCAA GATTATGCTA TCGGGCTAGC TATGTTGTTC
GTATCTTTCT CGATAGCATA CAACGCATTC AGAGGGTTCT ATTCGGACCT CGTTGATCTT
GCTGGTGATG TCCTTTACAA GCTCGGCGTA TGGGGACTAT TCTATGCAGG TGGGATGATA
GTATACACTT ATGCTGCGAA TTTCATTAAT TCTATCATTT ACTCAGTCGC AGGTCCATAT
CTAGGAATAG CAACGATAGA ATATACAGGA GGAGCAACTC TCTACACGGC CCTATTTGCA
TTAATGAACG GGGTTCCCTT TGGGTTTGGG GATTCTTTAG ATATGTTTTT ATCTCTAGTT
ATGTTTCTCT TAGCTTTCAC ATTAGCGGTA GCAACAATAA AATATGCTGT AATGTTATCT
GTTGTATCTA CTATTCCACT ATGGGCTTCA CTCTGGATAT TTGAATGGAC TAGAAAAATT
GCGATGATGG TAGTAGATTT GCTAATAGGC TTAATGGTAG CGGGTTTGGT AGCCGCAATA
ACTTTTGCAA TCTTAGCAAC ATTACCTATC GGAGCCTTGC TGTTTATCAT AGACCCTATA
GCGATTGATG GAGAATTCCT GTTCTCGTTA GTGCTTTTTG TGTTTAGTTT GAGACCAGGA
CAACATATGG TAGGAGCAAT TAGAGAATTG TCTTCATAA
|
|---|
| Protein sequence | MRKALTILLV ILILPSLLSG LSNIVAFAQS GSGSNNLGTF ISTLQTLIPA ALLLLAILAN
RYDQRYALVL FAAALASALF LAAATGGKLG GSVNITLVEL KVTVSGPTSA YTGNAETYTV
SWSPSMSGTV IWTVLYNGSI VYNSTGGTSF TYTFNEPGKY IIAAAVINDQ NYAGGSGAVL
ITVTNPPSPL GWLTGAITSA ISGFINTAAN TFEGFLTTLL QIFGAPLEWM TYSPTPNISP
ITQTIYNEIQ DYAIGLAMLF VSFSIAYNAF RGFYSDLVDL AGDVLYKLGV WGLFYAGGMI
VYTYAANFIN SIIYSVAGPY LGIATIEYTG GATLYTALFA LMNGVPFGFG DSLDMFLSLV
MFLLAFTLAV ATIKYAVMLS VVSTIPLWAS LWIFEWTRKI AMMVVDLLIG LMVAGLVAAI
TFAILATLPI GALLFIIDPI AIDGEFLFSL VLFVFSLRPG QHMVGAIREL SS
|
|---|
| |