| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2179 |
|---|
| Symbol | |
|---|
| ID | 5105400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2092740 |
|---|
| End bp | 2093375 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640508072 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001192242 |
|---|
| Protein GI | 146304926 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG5491] Conserved protein implicated in secretion |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.54958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000254205 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGGAA AAGATTTCCA AAAGTATTGG GCTGGATCTG ATGATAAGAG TGCATGGGAA
GGATTCAAGG GTGCTTTCAA GAGCAAGGAA CCCCTGAAAT ACAGGATTGT CCAGGCTAGA
TACAAGCTTG GATCAATGAT AAATAGATTG GATGTTCATA TAGCGAGGCT ACAGGAGAGG
GACAGGACAC TCTTTGAGAG GGTAGTAAGT GCCCAAATGG CGAAGGATAC AAGCAGGGCT
GCAATGTACG CAAACGAGGT AGCCGAGATT AGAAAAATGA GCAAGCAACT TATAATGACG
CAAATAGCTC TAGAGCAGGT TCAGCTTAGG CTCGAGACAG TAAGCGAGAT CAGTGAGGTC
TTTGTAAATC TTATACCCGT GGTAGGTGTA GTTAATGAGC TAAAGTCCGT GCTGAAGGGA
GTTATGCCAG AGATATCTTT GGAGCTCTCC TCGCTATCCG AGGACTTGCA GACGGTGGTA
ATAGAGGCAG GTGACTTCGC AGGAGGATAC TCCTACGCAT CCGCAGCTAC TCCAGAGGCC
AGGAAGATCT TGGAAGAGGC ATCCGCAATA GCGGAACAGA GAATGAAAGA GAAGTTCCCA
GACCTTCCCG TGAATGCGCT GGCCCAAAGG GCATAA
|
|---|
| Protein sequence | MLGKDFQKYW AGSDDKSAWE GFKGAFKSKE PLKYRIVQAR YKLGSMINRL DVHIARLQER
DRTLFERVVS AQMAKDTSRA AMYANEVAEI RKMSKQLIMT QIALEQVQLR LETVSEISEV
FVNLIPVVGV VNELKSVLKG VMPEISLELS SLSEDLQTVV IEAGDFAGGY SYASAATPEA
RKILEEASAI AEQRMKEKFP DLPVNALAQR A
|
|---|
| |