| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2155 |
|---|
| Symbol | |
|---|
| ID | 5104894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2070842 |
|---|
| End bp | 2071306 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640508046 |
|---|
| Product | SSU ribosomal protein S18P alanine acetyltransferase |
|---|
| Protein accession | YP_001192218 |
|---|
| Protein GI | 146304902 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0456] Acetyltransferases |
|---|
| TIGRFAM ID | [TIGR01575] ribosomal-protein-alanine acetyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0068043 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000372679 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCA TAATAATTTC TGATGCATGG GAAGAGGACT TGGAGCAGAT AGAGAAAATT
GAAAGGGAAA GCTTTGACAA CCCCTATCCC TTTTCCCTGC TTAGGGCATA CTTGCAGTTA
GCTGAGGGCC TTTTCCTAGT AGCAAGGGAC GGAAACAGGG TGATCGGGTA CTGTATAGGT
ATAGTTCAGT ACAAGGTGAG GGGCCACCTA ATCTCCATAG CCTCTTCTAA GGAGTTCAGG
AGAAATGGGG TTGGTTCCCT ACTTCTCCAG GAGCTTGAGA GGAGATTTCT GAAACTCGGT
TGTACATATT CTTACCTTGA AGTTAACGTG AATAACGCTG AAGCCATAAG GTTCTACTAC
AACAGATCAT ATAGAGTCGT GAGGACCAGG AAGAACTACT ATGGAAGGAA CAAACATGGA
TTTGTGATGC TGAAGAGCTT CAAGGGGGAT TCAGGACTTG AGTGA
|
|---|
| Protein sequence | MSSIIISDAW EEDLEQIEKI ERESFDNPYP FSLLRAYLQL AEGLFLVARD GNRVIGYCIG
IVQYKVRGHL ISIASSKEFR RNGVGSLLLQ ELERRFLKLG CTYSYLEVNV NNAEAIRFYY
NRSYRVVRTR KNYYGRNKHG FVMLKSFKGD SGLE
|
|---|
| |