Gene Msed_2136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2136 
Symbol 
ID5104875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp2056482 
End bp2057582 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content50% 
IMG OID640508027 
Productisopentenyl pyrophosphate isomerase 
Protein accessionYP_001192199 
Protein GI146304883 
COG category[C] Energy production and conversion 
COG ID[COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 
TIGRFAM ID[TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.163315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000969261 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCTTAA TTAACAGAAA ACTTGAACAT GTGGAGATCT GCCTATACGA GGACGTTCAA 
GGAATTGTCT CAACCCTCCT AGAGGACGTA ACTCTCATTC ATCAGGCCAT GCCAAGAATG
AACTTTAGGG ACGTAGACAC TAGGGCTGAA TTTCTGGGCA AGACCCTTTC GCTTCCCCTT
ATGGTTACAG GGATGACTGG AGGCCACGAG GAACTGGGAA AGGTAAACGC GGTCATAGCA
GAGGTTGTTG AGGAGCTTGG TCTTGCCATG GGGGTGGGGA GTCAAAGGGT GGCGGTTGAG
AGACCAGAAA CAGCTGAAAG CTTCAAGGTG ACCAGGAGGA TGGCCCCCAC AGCACCTCTG
GTGGCTAACC TTGGTTTACC CCAAGTAACA AGGGGTTATG GCGTGAAGCA ATTCATGGAC
GCAATACAGA TGATAGAGGC CAACGCTATC GCCGTCCATC TTAATCCTGC TCAGGAACTT
TTCCAGCCAG AGGGAGAACC AGAATACCCC CTCTCTGCCC TGGAAGCGTT GCGAGACATA
TCAAAGGAGC TCAACGTCCC CGTGATAGTT AAGGAGTCAG GGACCGGCAT GTCCATGGAA
ACGGCGAAGT TGCTTGCTGA TCATGGGTTC AAGATACTGG ATGTATCGGG GCAGGGAGGA
ACAAGCTGGA TAGCTGTGGA AATGGTGAGG AACAGGAGGA AGGGTAACTG GAAGTATGAA
AGCTCCCAGC TATTCTCAGG CTGGGGAATT CCAACTGCTG CCTCCATAGT GGAGACTAGG
TATTCTGTCC CTGACAGTTA CATCATAGCC AGCGGAGGAA TAAGGAATGG CCTGGACGTG
GCGAAGTCCA TCTCGCTGGG GGCAAACATT GCTGGAATGG CCAATCCTGT CCTTCATCAC
GCGGTAAGGG GTAAGGAGCA ACTGAAGAAG TTCTTTGAGG AAGTGGCGTT TCAGCTAAGG
GCAGCAATGT TCCTTACAGG CTCAAGGGAT GTCAAGACCC TCAGACACGC ACCTCTAGTG
ATCTCAGGGA AACTCAAGGA CTGGCTAGAG AGTAGAGGAT TAACCTTATC AGTTTATGAA
AGTATTAGAA AAGGAGCTTA A
 
Protein sequence
MSLINRKLEH VEICLYEDVQ GIVSTLLEDV TLIHQAMPRM NFRDVDTRAE FLGKTLSLPL 
MVTGMTGGHE ELGKVNAVIA EVVEELGLAM GVGSQRVAVE RPETAESFKV TRRMAPTAPL
VANLGLPQVT RGYGVKQFMD AIQMIEANAI AVHLNPAQEL FQPEGEPEYP LSALEALRDI
SKELNVPVIV KESGTGMSME TAKLLADHGF KILDVSGQGG TSWIAVEMVR NRRKGNWKYE
SSQLFSGWGI PTAASIVETR YSVPDSYIIA SGGIRNGLDV AKSISLGANI AGMANPVLHH
AVRGKEQLKK FFEEVAFQLR AAMFLTGSRD VKTLRHAPLV ISGKLKDWLE SRGLTLSVYE
SIRKGA