Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2136 |
Symbol | |
ID | 5104875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 2056482 |
End bp | 2057582 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640508027 |
Product | isopentenyl pyrophosphate isomerase |
Protein accession | YP_001192199 |
Protein GI | 146304883 |
COG category | [C] Energy production and conversion |
COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.163315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000969261 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCTTAA TTAACAGAAA ACTTGAACAT GTGGAGATCT GCCTATACGA GGACGTTCAA GGAATTGTCT CAACCCTCCT AGAGGACGTA ACTCTCATTC ATCAGGCCAT GCCAAGAATG AACTTTAGGG ACGTAGACAC TAGGGCTGAA TTTCTGGGCA AGACCCTTTC GCTTCCCCTT ATGGTTACAG GGATGACTGG AGGCCACGAG GAACTGGGAA AGGTAAACGC GGTCATAGCA GAGGTTGTTG AGGAGCTTGG TCTTGCCATG GGGGTGGGGA GTCAAAGGGT GGCGGTTGAG AGACCAGAAA CAGCTGAAAG CTTCAAGGTG ACCAGGAGGA TGGCCCCCAC AGCACCTCTG GTGGCTAACC TTGGTTTACC CCAAGTAACA AGGGGTTATG GCGTGAAGCA ATTCATGGAC GCAATACAGA TGATAGAGGC CAACGCTATC GCCGTCCATC TTAATCCTGC TCAGGAACTT TTCCAGCCAG AGGGAGAACC AGAATACCCC CTCTCTGCCC TGGAAGCGTT GCGAGACATA TCAAAGGAGC TCAACGTCCC CGTGATAGTT AAGGAGTCAG GGACCGGCAT GTCCATGGAA ACGGCGAAGT TGCTTGCTGA TCATGGGTTC AAGATACTGG ATGTATCGGG GCAGGGAGGA ACAAGCTGGA TAGCTGTGGA AATGGTGAGG AACAGGAGGA AGGGTAACTG GAAGTATGAA AGCTCCCAGC TATTCTCAGG CTGGGGAATT CCAACTGCTG CCTCCATAGT GGAGACTAGG TATTCTGTCC CTGACAGTTA CATCATAGCC AGCGGAGGAA TAAGGAATGG CCTGGACGTG GCGAAGTCCA TCTCGCTGGG GGCAAACATT GCTGGAATGG CCAATCCTGT CCTTCATCAC GCGGTAAGGG GTAAGGAGCA ACTGAAGAAG TTCTTTGAGG AAGTGGCGTT TCAGCTAAGG GCAGCAATGT TCCTTACAGG CTCAAGGGAT GTCAAGACCC TCAGACACGC ACCTCTAGTG ATCTCAGGGA AACTCAAGGA CTGGCTAGAG AGTAGAGGAT TAACCTTATC AGTTTATGAA AGTATTAGAA AAGGAGCTTA A
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Protein sequence | MSLINRKLEH VEICLYEDVQ GIVSTLLEDV TLIHQAMPRM NFRDVDTRAE FLGKTLSLPL MVTGMTGGHE ELGKVNAVIA EVVEELGLAM GVGSQRVAVE RPETAESFKV TRRMAPTAPL VANLGLPQVT RGYGVKQFMD AIQMIEANAI AVHLNPAQEL FQPEGEPEYP LSALEALRDI SKELNVPVIV KESGTGMSME TAKLLADHGF KILDVSGQGG TSWIAVEMVR NRRKGNWKYE SSQLFSGWGI PTAASIVETR YSVPDSYIIA SGGIRNGLDV AKSISLGANI AGMANPVLHH AVRGKEQLKK FFEEVAFQLR AAMFLTGSRD VKTLRHAPLV ISGKLKDWLE SRGLTLSVYE SIRKGA
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