| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2130 |
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| Symbol | |
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| ID | 5104423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 2049643 |
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| End bp | 2050311 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640508019 |
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| Product | SPP-like hydrolase |
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| Protein accession | YP_001192193 |
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| Protein GI | 146304877 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
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| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01482] Sucrose-phosphate phosphatase subfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB
[TIGR01487] sucrose-phosphate phosphatase-like hydrolase, Archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000113582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000579549 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGATCAAGT TGCTTCTAAC GGATCTAGAC GGTACCCTAA CAGAGGACAG GGGTACCTAC
GTAGTGGACA TAGGCGCGAT CAAGGCACTC AGGAGAGCAG AGAAGGCAGG TATCAGGGTG
GCCCTGGTCA GCGGAAACTC ATACCCTGTT TTAAGGGGAT TACACAACTA CCTGGGACTA
AGCGGGGGGT TAGTTGCTGA AAACGGTTGC TTCGTTTTTC ATGGGGGAGT AACTTTCAGG
GTCTGTGAAA CCGTCCCTAG GGAAGTAGTC TCAGAGTTCG CGAAAACCTT CAACCTTAGG
GAGAGCTGGC AGAACGAGTT CAGGAGGTCA GACTTTGGTT TCACCCCGGC TGAATTGAAG
GATGAAATGA TCAAGTGGGC GGAGGAAAGG GGATTGGTTG TCCAGAGCAG TGGATACGCC
CTGCACCTTT CAGGTAAACC TGGGGGGAAG GGGGCTGGGG TTAGAAAGCT TCTGGAACTC
GCAAATGTGA AGAGAGAGGA AACAGGAGCG ATAGGGGACT CCAGGACCGA CATAGAGATG
TTCAGGGAAG CAGGAATCAC GGCCGCGGTG TCCAACGCGG ACCCAGAGCT GAAGAGAGTG
GCGTCGATCT CACTTAAATT AAAAAGCGGA GCAGGAGTTA TGGAATTCAT TGACATGTTA
CTGAGTTGA
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| Protein sequence | MIKLLLTDLD GTLTEDRGTY VVDIGAIKAL RRAEKAGIRV ALVSGNSYPV LRGLHNYLGL
SGGLVAENGC FVFHGGVTFR VCETVPREVV SEFAKTFNLR ESWQNEFRRS DFGFTPAELK
DEMIKWAEER GLVVQSSGYA LHLSGKPGGK GAGVRKLLEL ANVKREETGA IGDSRTDIEM
FREAGITAAV SNADPELKRV ASISLKLKSG AGVMEFIDML LS
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