| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2096 |
|---|
| Symbol | ubiA |
|---|
| ID | 5104390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2017743 |
|---|
| End bp | 2018648 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640507986 |
|---|
| Product | prenyltransferase |
|---|
| Protein accession | YP_001192160 |
|---|
| Protein GI | 146304844 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases |
|---|
| TIGRFAM ID | [TIGR01475] putative 4-hydroxybenzoate polyprenyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.274994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTTGGG ATCCTGGAGG AGCGACAGCT AGTCACGGTA AACTCTACAT CTATTTGAAG
TTCCTTAGAA TGGAGCAGAC ATTTTTTAGT CTGCCCATGG CATACATGGG GGCGTTCGTA
GCCGTTAGGG GTATACCATC TCCAAGCGTT TTGTTACTAA TATTTTCGGC CCTCTTCTTC
CTTAGGATAG CAGGGATGAC TAATGATAAC CTAGCTGATA GGGAGATAGA CTCGAGAAAT
CCCAGAACAA GGACGAGGCC CCTTGTCACT GGAGCTATAA CCACTAAAGA GGCCAAGGTA
TTGATAGCCA TAGGCCTCGT GGGTTTCTTC GCGTCTGCCT ATCTTGTGAA TAGATGGGCC
TTCCTTCTTT CACCCATAGT GGCACTGGTT ACAATGACCT ATCCTTACAT GAAGAGGTTC
ACTGCCTTCG CGAATTATCA AATAGCCACA GTGCAGGGCC TGGCAGTATT TAGCGGAGCT
GTGGCCAGCG TGGGAGTAGA TGCAACATCC CTGACCCAGG TGTTGGGATC CGTTCCTTGG
TTGTTCGTGA TTGCAACGAT ACTTTGGGCC GTTGGATTCG ATCTTTACAA TCATATTCCG
GATGCAGATT TCGATAGAAA GATGGGTCTA CATAGTTTCG CTGTAGTGCT GGGTAACAGG
GCATTAACCT TCGCTGGACT AAATCAGTTG TTCTCAGTGC TCCTCGATAT CCTTGCTGAT
TTCATGTATA ACCTAGGACC TATTTCCTAT GCCTCAACGG TGTTGCACGG CCTCGTTATG
GCCTACGCCT TCTATTTGGC CTCCAAGGGG ATGTTTGGGA AGGCTTTCTA CTATAATATT
TACTCCTCAA TTATACTGGG GTTAGGCATA GACTTGGATA TTCTTCTTGG GATACCATTC
ACCTAA
|
|---|
| Protein sequence | MSWDPGGATA SHGKLYIYLK FLRMEQTFFS LPMAYMGAFV AVRGIPSPSV LLLIFSALFF
LRIAGMTNDN LADREIDSRN PRTRTRPLVT GAITTKEAKV LIAIGLVGFF ASAYLVNRWA
FLLSPIVALV TMTYPYMKRF TAFANYQIAT VQGLAVFSGA VASVGVDATS LTQVLGSVPW
LFVIATILWA VGFDLYNHIP DADFDRKMGL HSFAVVLGNR ALTFAGLNQL FSVLLDILAD
FMYNLGPISY ASTVLHGLVM AYAFYLASKG MFGKAFYYNI YSSIILGLGI DLDILLGIPF
T
|
|---|
| |