Gene Msed_2001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2001 
Symbol 
ID5103388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1934665 
End bp1935444 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content47% 
IMG OID640507889 
Productshort chain enoyl-CoA hydratase 
Protein accessionYP_001192065 
Protein GI146304749 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTTG AAACAATAGA AACTAAAAAA GAAGGAAACT TGTTCTGGAT TACGTTAAAT 
AGACCCGATA AACTAAACGC ACTAAACGCT AAATTACTTG AGGAGTTAGA TAGGGCAGTC
TCTCAGGCAG AGTCTGACCC AGAGATTAGG GTTATCATCA TTACAGGGAA AGGAAAGGCC
TTCTGCGCAG GGGCTGACAT AACCCAGTTT AACCAGTTAA CCCCAGCAGA AGCCTGGAAA
TTCTCTAAGA AAGGAAGAGA GATCATGGAC AAGATAGAGG CACTGAGCAA ACCCACCATT
GCCATGATCA ATGGATATGC CCTTGGGGGT GGACTAGAGC TAGCCTTAGC CTGTGATATA
AGGATCGCAG CGGAGGAGGC CCAACTAGGC CTTCCAGAGA TAAACCTAGG GATATATCCG
GGGTATGGGG GGACTCAGAG GTTAACCAGA GTTATAGGAA AGGGAAGAGC CCTGGAGATG
ATGATGACGG GCGATCGTAT TCCTGGTAAG GATGCTGAGA AATATGGTCT CGTGAATAGG
GTTGTCCCCC TAGCTAACTT GGAGCAAGAG ACAAGGAAGC TGGCAGAAAA GATAGCCAAG
AAGTCTCCTA TCTCTCTCGC CTTAATCAAG GAAGTTGTAA ACAGGGGACT AGACTCTCCC
CTACTGTCAG GTCTAGCGTT GGAAAGCGTA GGATGGGGAG TCGTGTTTTC TACGGAGGAC
AAGAAGGAGG GGGTAAGTGC CTTCCTGGAG AAGAGAGAGC CTACGTTTAA GGGAAAATAG
 
Protein sequence
MEFETIETKK EGNLFWITLN RPDKLNALNA KLLEELDRAV SQAESDPEIR VIIITGKGKA 
FCAGADITQF NQLTPAEAWK FSKKGREIMD KIEALSKPTI AMINGYALGG GLELALACDI
RIAAEEAQLG LPEINLGIYP GYGGTQRLTR VIGKGRALEM MMTGDRIPGK DAEKYGLVNR
VVPLANLEQE TRKLAEKIAK KSPISLALIK EVVNRGLDSP LLSGLALESV GWGVVFSTED
KKEGVSAFLE KREPTFKGK