| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1900 |
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| Symbol | |
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| ID | 5103287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1843281 |
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| End bp | 1843781 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640507787 |
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| Product | NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 |
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| Protein accession | YP_001191964 |
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| Protein GI | 146304648 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0839] NADH:ubiquinone oxidoreductase subunit 6 (chain J) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00282958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.084057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCTGA CACAGAGTGA CTTTCAGATA GGGATATTCT TCCTTTTCTC CATCTTCGCC
CTGGCTACAG CTCTCTTCAT CGTGAACTCA AAGAACGTGT TCTATTCCGC GGTGTCCCTA
GCCTTTCTGG GGATATCTGT GGCCGTGTTG ATAGCAGATC TGGACCCTGA GGCCTACTCC
CTTTACTCGG CTTTTCACCT CCTCCTTTAC GTTGGGGCAA CCGTGGTGTT CCTCTCGATC
TCTCTGGTAA TGTTCAGGGG GCTAGAGGTC AAGGAAATTA GAACTCCTTG GGCTCCTGCA
ATGGCCCTCC TATCGGCTGT AGCTTTCTTC GCCGTTCTAG TTCTCTCCAC CAGCTCCATC
ACTCCAGTTC AGATACAACC CCTCAATCTA GCAGTGGTAG GTGAGAAAAT AGTGTCGCAG
TATTGGTTCC CTGCAGTGGT ACTCGTGATA GCTTTGCTCA CAACAATGAT TGAGGCGCTT
TCCCTAGCAA GGAGGGATTA A
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| Protein sequence | MYLTQSDFQI GIFFLFSIFA LATALFIVNS KNVFYSAVSL AFLGISVAVL IADLDPEAYS
LYSAFHLLLY VGATVVFLSI SLVMFRGLEV KEIRTPWAPA MALLSAVAFF AVLVLSTSSI
TPVQIQPLNL AVVGEKIVSQ YWFPAVVLVI ALLTTMIEAL SLARRD
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