| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1785 |
|---|
| Symbol | |
|---|
| ID | 5104785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1727165 |
|---|
| End bp | 1727707 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507684 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001191864 |
|---|
| Protein GI | 146304548 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCTAT TCATAGGGAT TCCAGTTTAT GACGCACCGT GGCTAAGGGA GGCTCTTGGA
ATGGTGGAGA GAACTGGAGC TGACGTGAAG CTCGTGGAAC CCCAAAACGT TCACATTACC
CTGGCTTTCC TGGGGGAAGT TGCGGAGGAC AGGGTCAACC TGGTAAGGGA GAGCTTGGAC
GAGGTGAAGT TCACGGCCTT CAGGGTTGTG TTCAGGGGGT TAGGAGCTTT CCCCAGCGTG
TCCAGACCTA GGGTTGTGTG GATGGGAATA ACTGAAGGTT TCAACGAGCT CAAAAGGATC
AGGACATCCC TGGTGAAAGC CCTAAACTCC AGGAGAGTTA GGGTGGAAGA GGAACAATTT
GTTCCGCACC TTACCCTGGG AAGGGTAAAG GGACCGAGAG GTGTGCTCGA GCTTGCCAAA
CTCGTGGAGG AGATGTCGGA CAAGCAGTTT GGTGAACAGG AGGTAAAGGA AATAGTCCTG
TTCAAGAGCA CCTTAACCCC CAAGGGGCCT ATCTACGATC CACTTCACAG AATCACGGCA
TAA
|
|---|
| Protein sequence | MRLFIGIPVY DAPWLREALG MVERTGADVK LVEPQNVHIT LAFLGEVAED RVNLVRESLD
EVKFTAFRVV FRGLGAFPSV SRPRVVWMGI TEGFNELKRI RTSLVKALNS RRVRVEEEQF
VPHLTLGRVK GPRGVLELAK LVEEMSDKQF GEQEVKEIVL FKSTLTPKGP IYDPLHRITA
|
|---|
| |