| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1575 |
|---|
| Symbol | |
|---|
| ID | 5104020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1524514 |
|---|
| End bp | 1525482 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640507461 |
|---|
| Product | phosphomevalonate kinase |
|---|
| Protein accession | YP_001191654 |
|---|
| Protein GI | 146304338 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3890] Phosphomevalonate kinase |
|---|
| TIGRFAM ID | [TIGR01220] phosphomevalonate kinase, ERG8-type, Gram-positive branch |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00534382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCT TTGAAGTGAG TGCTCCGGGG AAGGTCCTGT GGATCGGGAG CTACTCGGTG
GTATTTGGTG GGATATCGCA TGTCATTGCA ATTGACAAGA GGGTTAGGTG TAGATGTGAG
GAGTCGGAAA GACTAGAATT TATAACGTCG TATGGTAACT TCTCCGAAGG CCAGAACGAA
CTCATAGACA GTGTGCTCAA CGAGGTTAGA ACAATCTACG ATATTCCCCG CTTGAGGGTA
TATCTCATAA ACGATCCTGC ATTTCAGATA GATGGGAAGA AAACTGGGTT AGGGAGCTCA
TCTGCAGGGA CAGTGGCATT GACGGCTTGC CTCAGTTACG CCGTAACTGG AAAGTTTGAT
GTGGACCTGG TGTACAAACT TTCACAGAGG GCGAACTATA GACGACAGAA GGGAATTGGT
AGCGGTTTCG ATATAGCTGC GGCGACCTAC GGTAGCGTGA TATACAGGAG ATACAATGAC
ATCAACAAGG TTGATTCTGT GGTGGAAAGG CTAGACATCC CACAAAACAT ACAGATACTT
CTAGGTTTTA CGGGAAGGAG TGCCAGCACA GTGAATCTAG TAAGGAGGTT TGAGGACACC
AAGAACAATC CAAGGTTTAA GGAACTAATG AGTGAGATTG AGATAGATAA TGAAATCGCA
ATAAAGCTGT TGAGGTTAGG GAAAATTGAT GCTGCAGTTC CACACATAAA GCTGGCTAGA
CAGAACTTGA ACCTGCTTTC GAAAGAGGTG GTAGGAGTGG AAATTGAAAC AGAAGAGGAT
AGAAAGCTCA TGAGCTTAGC CGAGAAAAAC GGCGCCTTGA TATCCCTGAT GCCCGGGGCA
GGTGGAGGAG ATCTCATACT AGCTCTAGGG GAGAACCTTG CGAGAGTCAA GGAGACTTGG
GAGAGGATGA GCATTAGAAC CATTAATGTG AAACAAGATG AAGGTGTGAA AATTGAAGCT
AGAAGCTGA
|
|---|
| Protein sequence | MQSFEVSAPG KVLWIGSYSV VFGGISHVIA IDKRVRCRCE ESERLEFITS YGNFSEGQNE
LIDSVLNEVR TIYDIPRLRV YLINDPAFQI DGKKTGLGSS SAGTVALTAC LSYAVTGKFD
VDLVYKLSQR ANYRRQKGIG SGFDIAAATY GSVIYRRYND INKVDSVVER LDIPQNIQIL
LGFTGRSAST VNLVRRFEDT KNNPRFKELM SEIEIDNEIA IKLLRLGKID AAVPHIKLAR
QNLNLLSKEV VGVEIETEED RKLMSLAEKN GALISLMPGA GGGDLILALG ENLARVKETW
ERMSIRTINV KQDEGVKIEA RS
|
|---|
| |