Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1530 |
Symbol | |
ID | 5104058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 1493254 |
End bp | 1493928 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640507417 |
Product | ABC transporter related |
Protein accession | YP_001191610 |
Protein GI | 146304294 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0701501 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGTTA TAAAGCTTGA GAACGTGAGC AAAATTTATG GAACCAAGGT TAAGGTTACA GCACTCAAGG ACATTAACCT TAGCATAGAA GAAGGTGAGT TTGTAGCAAT AGTTGGGCCT TCTGGAAGTG GGAAAACTAC CATGCTTACG ATTATGGGCA CCTTAGCTAG ACCAACTACA GGTAAAGTCT ATATTTATGG TCATGACACG ACATCACTAA ACGATGACGA ACTTTCAAAG ATAAGGAACA CATACATTGG GTTTGTATTT CAGAATTATA ACTTAATTGA TAGGATGACT GCTCTGGAGA ACGTTGAGTT GCCCCTGGTA GCCCGTAATT TACCGAAAAA AGAGAGGAGA GAGATAGCAC TAGACATACT TTCCAAGCTA GGTCTAGGGG AACTGGCTTA CAAGAAACCC ACAGAACTTT CTGGTGGACA ACAACAGAGA GTATCCATAG CTAGGGCCTT GGCGCAAAGC CCAAAGATAA TTCTTGCCGA CGAACCAACA GCGAACCTCG ATAGTAAGAG CGGTGAGGCG GTGTTAAAGA CCTTTCAGCA GGCAAATAGG GAGTTCAAGA CCACTGTTGT TATCATCACA CATGATCCAG ACGTGGCTGC CATAGCAGGG AGAAAGGTAC ACATTAGAGA TGGTCAAATA GAGAAGATAG AGTGA
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Protein sequence | MEVIKLENVS KIYGTKVKVT ALKDINLSIE EGEFVAIVGP SGSGKTTMLT IMGTLARPTT GKVYIYGHDT TSLNDDELSK IRNTYIGFVF QNYNLIDRMT ALENVELPLV ARNLPKKERR EIALDILSKL GLGELAYKKP TELSGGQQQR VSIARALAQS PKIILADEPT ANLDSKSGEA VLKTFQQANR EFKTTVVIIT HDPDVAAIAG RKVHIRDGQI EKIE
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