Gene Msed_1530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1530 
Symbol 
ID5104058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1493254 
End bp1493928 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content43% 
IMG OID640507417 
ProductABC transporter related 
Protein accessionYP_001191610 
Protein GI146304294 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0701501 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGTTA TAAAGCTTGA GAACGTGAGC AAAATTTATG GAACCAAGGT TAAGGTTACA 
GCACTCAAGG ACATTAACCT TAGCATAGAA GAAGGTGAGT TTGTAGCAAT AGTTGGGCCT
TCTGGAAGTG GGAAAACTAC CATGCTTACG ATTATGGGCA CCTTAGCTAG ACCAACTACA
GGTAAAGTCT ATATTTATGG TCATGACACG ACATCACTAA ACGATGACGA ACTTTCAAAG
ATAAGGAACA CATACATTGG GTTTGTATTT CAGAATTATA ACTTAATTGA TAGGATGACT
GCTCTGGAGA ACGTTGAGTT GCCCCTGGTA GCCCGTAATT TACCGAAAAA AGAGAGGAGA
GAGATAGCAC TAGACATACT TTCCAAGCTA GGTCTAGGGG AACTGGCTTA CAAGAAACCC
ACAGAACTTT CTGGTGGACA ACAACAGAGA GTATCCATAG CTAGGGCCTT GGCGCAAAGC
CCAAAGATAA TTCTTGCCGA CGAACCAACA GCGAACCTCG ATAGTAAGAG CGGTGAGGCG
GTGTTAAAGA CCTTTCAGCA GGCAAATAGG GAGTTCAAGA CCACTGTTGT TATCATCACA
CATGATCCAG ACGTGGCTGC CATAGCAGGG AGAAAGGTAC ACATTAGAGA TGGTCAAATA
GAGAAGATAG AGTGA
 
Protein sequence
MEVIKLENVS KIYGTKVKVT ALKDINLSIE EGEFVAIVGP SGSGKTTMLT IMGTLARPTT 
GKVYIYGHDT TSLNDDELSK IRNTYIGFVF QNYNLIDRMT ALENVELPLV ARNLPKKERR
EIALDILSKL GLGELAYKKP TELSGGQQQR VSIARALAQS PKIILADEPT ANLDSKSGEA
VLKTFQQANR EFKTTVVIIT HDPDVAAIAG RKVHIRDGQI EKIE