Gene Msed_1480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1480 
Symbol 
ID5104727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand- 
Start bp1448897 
End bp1449991 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content47% 
IMG OID640507368 
Productlipoate-protein ligase 
Protein accessionYP_001191561 
Protein GI146304245 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0095] Lipoate-protein ligase A 
TIGRFAM ID[TIGR00545] lipoyltransferase and lipoate-protein ligase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.521497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTGGA GGTTTGTTTC CCTCCCTCCA CAGGACGGCT ATCACATGGT AACTTCCTTC 
GTGTCAGTTG CTGAGTACGT TACAAGGGGA GGAAAAAACA CATTTCTAGT TTTTTCTGTT 
AAGGAACCAT TCGTTAACGT TGGAGTTCAT CAGGAGGTTT GGCTGGAGGT AGATCTAGAT 
TACACCTTGA AGAACAAGAT ACCAGTAGTG AGAAGAGACT TGGGCGGAGG TACTGTGGTC 
ATAACTCAGG GGGAGCACGA CTATTTTATC GTGTTGAGGC AAGAGGAGGC TCCCTCGGAT 
CCTAAGGCTC TTTACGAGAA ATTTCTTACA CCCGTAGTTA ACGTGCTCAG GGACTACGGT 
TTAAACGCTT CTCTAAGGGA CCAGGACATA GTGGTCAATG GGAGAAAGAT TAGCGGGAAT 
GGAGCCATGA CTCACGGTAA GGCTGTGGTT ATTGCTGGAA ATATTCTCAT GAGGGCTGAC 
ACACAACTGA TGAGCAAGTG CATCAAGGTC CCCTCCGAGA AGTTCAGGGA TAAAATGGCG 
AAGGATATGT CGGAATGGAT AACCTCTCTG GAACGAGAGC TCGGATATGT TCCACCTAGG 
GAGGAACTAG ACAAGAAACT GAAGCAAAGT TTCGAGGCTC ATCTGGGAAT TAAGTTTGAA 
GATTCCATGT TAACCCCAGA GGAGATTGAA AGATGGGAAC AGTTGGCGAG TGAAAAGAGG 
AACGAGGAGT GGATTTACTA TAAGGACAGG AGGCATCCCG ATTTAAGGAC CGATAGGTGC 
GTTAAGATCT CCTCCGCCGT AGCCATATGT CACCTGGATT ATAAGGCCAG AAAACTGGTC 
AGGATAACCG CGAAGTTCGT GGAGAAGAGA TTACAGGAGG TCTCCATTTC AGGTGATTTC 
TTCGTAATGT CGCCCAGGGA CTTTATAGAG AAGCTTGAGG ACAGGCTTAG CGGGACCTCG 
CCTGATGAGA TATCGCAAGT GATTGATAAA GCGTTCTCTG AGTTGAAGCC GGTAATCTTT 
GGATTTAACG CGGACGACCT AAAGAAGGCG TTCGAAGAGA TACTGAATAA GCCAGAGGTT 
CAAGAGGTCA CATAA
 
Protein sequence
MSWRFVSLPP QDGYHMVTSF VSVAEYVTRG GKNTFLVFSV KEPFVNVGVH QEVWLEVDLD 
YTLKNKIPVV RRDLGGGTVV ITQGEHDYFI VLRQEEAPSD PKALYEKFLT PVVNVLRDYG 
LNASLRDQDI VVNGRKISGN GAMTHGKAVV IAGNILMRAD TQLMSKCIKV PSEKFRDKMA 
KDMSEWITSL ERELGYVPPR EELDKKLKQS FEAHLGIKFE DSMLTPEEIE RWEQLASEKR 
NEEWIYYKDR RHPDLRTDRC VKISSAVAIC HLDYKARKLV RITAKFVEKR LQEVSISGDF 
FVMSPRDFIE KLEDRLSGTS PDEISQVIDK AFSELKPVIF GFNADDLKKA FEEILNKPEV 
QEVT