Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1324 |
Symbol | |
ID | 5104575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 1303026 |
End bp | 1304453 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640507213 |
Product | flagella assembly protein J-like protein |
Protein accession | YP_001191406 |
Protein GI | 146304090 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1955] Archaeal flagella assembly protein J |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000149145 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAGTTAC GTAGTCAAGA CGAAGTGGAC TCCAAGTTTA TCTTTTTAGT AGCGTACATA CTGGCCCTGT TCACTGCGGA TCTTCCGCCA GAGAGCATAG TGGTGACACT CTCTGGCCTT AAGTACTTTG GAGAGTACTC CAAGACCTTT GGTAGACTGG CCACGCTAAT TCACGGATAT AGATACAAGT TCTCCAACGC AATCAATATC GTGAGTACTA AGATTCACAT TAAACCTTTC AGAGAGTTCA TAGTTAGGTT TTCACAGGCC CTCTCCCACG GGGATGAGAT GATCTCTTTC TTAAACAGGG AAATAGACAT GACATTAAAT GATTATAACG CTGACATGAA CAGGAAAATA GAATCAATGA ATAATTTTCT TGCAATTTAT GGGAGTTTGA GTAGCTCGCT AGTCTTCCTG ATGGTAAACT TGACACTGGT ATCTATCCTG TTTGATGTGG GAACTTCAGT TCTTCAACTG CTTTCCATGG CAATGGTTGC CGTGATAGGT CTACTTACCC TAGTGGTTTA CGTGCTATAT AAACCAGAGA TTTACGTGAT CCTGAAGAGG AATGAGAAAC TGGTTGCTGT AATAGGGTTG CTCTTATCCA TGACAATAAT GCTACTTCAA AGAAATTATG TTGCTGTGGC CATAGCGGGA GGAGTGTTAA TAGGAACAGG AATGTTTTTC AGAATGAAGG AGAGAAGACT TAACATATTA GAAAGACATT ATGTGGCATT TGTCACCTAC TTTTCCAGGA CCTATCATGT AGTCAACAAT TTAATGGATA CTTTCCTCAG TGTGATGAGG GGGGATCTGG GGACCATGAG ACCTCTGGTT TCATCTTCCC TAAATAGGCT CAAATTTGGC GTGAGAAAGT CATTAATTTT TGAGATGATG GGTGAGGAGA GCGGTAGTGT TTTGATTTTG ATGATGAACA GAATTATATC GGCTACCGTG GAGTTAGGAG GTAATGTAAA AGAGGTGGGC GAAACTGTCT CAAGGATAGG GACTACACTG CTCAACCTTA GGGCTAGAAG GGAGCAGAAC GGTAGAGCCT TCGAAGCCTC GGTCTTCGCC ATGCAGGGAG CCAGTTCGGC TATAGGTGGT TCGCTCTTGG CGTTAATCCA GGTATTCGAG AATATTTTCA GTACAAATGT TATTAACTCA ATTTTCACTC TGGGACAGGT TAGTATTCCT CAGCTATCAC TGCTTCTCTT GGCTATCCTA GTTGCGCTGT CCTTTGCTAA CGGAATTTCT ATTGCAATCG CATATGGTAA GACCTTCTAT TCCTCCCTTT ACTTTGTGGG AATACTTCTT GTGATTACTG CTCTCAGTTT CCATTTCACC TATGTTCTGA CTCAGGGAAT ATTCTCAGGG GTATTTCAAG GATTACCAAC AGTAACTAGC ATTCCAGGCA ATATCTGA
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Protein sequence | MQLRSQDEVD SKFIFLVAYI LALFTADLPP ESIVVTLSGL KYFGEYSKTF GRLATLIHGY RYKFSNAINI VSTKIHIKPF REFIVRFSQA LSHGDEMISF LNREIDMTLN DYNADMNRKI ESMNNFLAIY GSLSSSLVFL MVNLTLVSIL FDVGTSVLQL LSMAMVAVIG LLTLVVYVLY KPEIYVILKR NEKLVAVIGL LLSMTIMLLQ RNYVAVAIAG GVLIGTGMFF RMKERRLNIL ERHYVAFVTY FSRTYHVVNN LMDTFLSVMR GDLGTMRPLV SSSLNRLKFG VRKSLIFEMM GEESGSVLIL MMNRIISATV ELGGNVKEVG ETVSRIGTTL LNLRARREQN GRAFEASVFA MQGASSAIGG SLLALIQVFE NIFSTNVINS IFTLGQVSIP QLSLLLLAIL VALSFANGIS IAIAYGKTFY SSLYFVGILL VITALSFHFT YVLTQGIFSG VFQGLPTVTS IPGNI
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